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Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.
Samandi S, Roy AV, Delcourt V, Lucier JF, Gagnon J, Beaudoin MC, Vanderperre B, Breton MA, Motard J, Jacques JF, Brunelle M, Gagnon-Arsenault I, Fournier I, Ouangraoua A, Hunting DJ, Cohen AA, Landry CR, Scott MS, Roucou X. Samandi S, et al. Among authors: ouangraoua a. Elife. 2017 Oct 30;6:e27860. doi: 10.7554/eLife.27860. Elife. 2017. PMID: 29083303 Free PMC article.
Aligning coding sequences with frameshift extension penalties.
Jammali S, Kuitche E, Rachati A, Bélanger F, Scott M, Ouangraoua A. Jammali S, et al. Among authors: ouangraoua a. Algorithms Mol Biol. 2017 Mar 31;12:10. doi: 10.1186/s13015-017-0101-4. eCollection 2017. Algorithms Mol Biol. 2017. PMID: 28373895 Free PMC article.
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.
Brunet MA, Brunelle M, Lucier JF, Delcourt V, Levesque M, Grenier F, Samandi S, Leblanc S, Aguilar JD, Dufour P, Jacques JF, Fournier I, Ouangraoua A, Scott MS, Boisvert FM, Roucou X. Brunet MA, et al. Among authors: ouangraoua a. Nucleic Acids Res. 2019 Jan 8;47(D1):D403-D410. doi: 10.1093/nar/gky936. Nucleic Acids Res. 2019. PMID: 30299502 Free PMC article.
OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes.
Brunet MA, Lucier JF, Levesque M, Leblanc S, Jacques JF, Al-Saedi HRH, Guilloy N, Grenier F, Avino M, Fournier I, Salzet M, Ouangraoua A, Scott MS, Boisvert FM, Roucou X. Brunet MA, et al. Among authors: ouangraoua a. Nucleic Acids Res. 2021 Jan 8;49(D1):D380-D388. doi: 10.1093/nar/gkaa1036. Nucleic Acids Res. 2021. PMID: 33179748 Free PMC article.
OpenProt 2.0 builds a path to the functional characterization of alternative proteins.
Leblanc S, Yala F, Provencher N, Lucier JF, Levesque M, Lapointe X, Jacques JF, Fournier I, Salzet M, Ouangraoua A, Scott MS, Boisvert FM, Brunet MA, Roucou X. Leblanc S, et al. Among authors: ouangraoua a. Nucleic Acids Res. 2024 Jan 5;52(D1):D522-D528. doi: 10.1093/nar/gkad1050. Nucleic Acids Res. 2024. PMID: 37956315 Free PMC article.
32 results