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Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.
Petryszak R, Keays M, Tang YA, Fonseca NA, Barrera E, Burdett T, Füllgrabe A, Fuentes AM, Jupp S, Koskinen S, Mannion O, Huerta L, Megy K, Snow C, Williams E, Barzine M, Hastings E, Weisser H, Wright J, Jaiswal P, Huber W, Choudhary J, Parkinson HE, Brazma A. Petryszak R, et al. Among authors: parkinson he. Nucleic Acids Res. 2016 Jan 4;44(D1):D746-52. doi: 10.1093/nar/gkv1045. Epub 2015 Oct 19. Nucleic Acids Res. 2016. PMID: 26481351 Free PMC article.
The EMBL nucleotide sequence database.
Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Lombard V, Lopez R, Parkinson H, Redaschi N, Sterk P, Stoehr P, Tuli MA. Stoesser G, et al. Nucleic Acids Res. 2001 Jan 1;29(1):17-21. doi: 10.1093/nar/29.1.17. Nucleic Acids Res. 2001. PMID: 11125039 Free PMC article.
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. Brazma A, et al. Nat Genet. 2001 Dec;29(4):365-71. doi: 10.1038/ng1201-365. Nat Genet. 2001. PMID: 11726920
The European Bioinformatics Institute's data resources.
Brooksbank C, Camon E, Harris MA, Magrane M, Martin MJ, Mulder N, O'Donovan C, Parkinson H, Tuli MA, Apweiler R, Birney E, Brazma A, Henrick K, Lopez R, Stoesser G, Stoehr P, Cameron G. Brooksbank C, et al. Nucleic Acids Res. 2003 Jan 1;31(1):43-50. doi: 10.1093/nar/gkg066. Nucleic Acids Res. 2003. PMID: 12519944 Free PMC article.
ArrayExpress--a public repository for microarray gene expression data at the EBI.
Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Rocca-Serra P, Sansone SA. Brazma A, et al. Nucleic Acids Res. 2003 Jan 1;31(1):68-71. doi: 10.1093/nar/gkg091. Nucleic Acids Res. 2003. PMID: 12519949 Free PMC article.
ArrayExpress: a public database of gene expression data at EBI.
Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M, Contrino S, Vilo J, Abeygunawardena N, Mukherjee G, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Sansone SA. Rocca-Serra P, et al. C R Biol. 2003 Oct-Nov;326(10-11):1075-8. doi: 10.1016/j.crvi.2003.09.026. C R Biol. 2003. PMID: 14744115 Free article.
ArrayExpress--a public repository for microarray gene expression data at the EBI.
Parkinson H, Sarkans U, Shojatalab M, Abeygunawardena N, Contrino S, Coulson R, Farne A, Lara GG, Holloway E, Kapushesky M, Lilja P, Mukherjee G, Oezcimen A, Rayner T, Rocca-Serra P, Sharma A, Sansone S, Brazma A. Parkinson H, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D553-5. doi: 10.1093/nar/gki056. Nucleic Acids Res. 2005. PMID: 15608260 Free PMC article.
Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress.
Mukherjee G, Abeygunawardena N, Parkinson H, Contrino S, Durinck S, Farne A, Holloway E, Lilja P, Moreau Y, Oezcimen A, Rayner T, Sharma A, Brazma A, Sarkans U, Shojatalab M. Mukherjee G, et al. Plant Physiol. 2005 Oct;139(2):632-6. doi: 10.1104/pp.105.063156. Plant Physiol. 2005. PMID: 16219923 Free PMC article.
Data storage and analysis in ArrayExpress.
Brazma A, Kapushesky M, Parkinson H, Sarkans U, Shojatalab M. Brazma A, et al. Methods Enzymol. 2006;411:370-86. doi: 10.1016/S0076-6879(06)11020-4. Methods Enzymol. 2006. PMID: 16939801 Review.
151 results