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Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Speiser DI, et al. Among authors: patel nh. BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x. BMC Bioinformatics. 2014. PMID: 25407802 Free PMC article.
Evolution of coloration patterns.
Protas ME, Patel NH. Protas ME, et al. Among authors: patel nh. Annu Rev Cell Dev Biol. 2008;24:425-46. doi: 10.1146/annurev.cellbio.24.110707.175302. Annu Rev Cell Dev Biol. 2008. PMID: 18593352 Review.
Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).
Battelle BA, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML. Battelle BA, et al. Among authors: patel nh. Genome Biol Evol. 2016 Jun 3;8(5):1571-89. doi: 10.1093/gbe/evw100. Genome Biol Evol. 2016. PMID: 27189985 Free PMC article.
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.
Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Sémon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker A. Kao D, et al. Among authors: patel nh. Elife. 2016 Nov 16;5:e20062. doi: 10.7554/eLife.20062. Elife. 2016. PMID: 27849518 Free PMC article.
331 results