Paulsen J - Search Results

1

The Genomic HyperBrowser: an analysis web server for genome-scale data.

Sandve GK, Gundersen S, Johansen M, Glad IK, Gunathasan K, Holden L, Holden M, Liestøl K, Nygård S, Nygaard V, Paulsen J, Rydbeck H, Trengereid K, Clancy T, Drabløs F, Ferkingstad E, Kalas M, Lien T, Rye MB, Frigessi A, Hovig E. Sandve GK, et al. Among authors: paulsen j. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W133-41. doi: 10.1093/nar/gkt342. Epub 2013 Apr 30. Nucleic Acids Res. 2013. PMID: 23632163 Free PMC article.

2

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements.

Paulsen J, Lien TG, Sandve GK, Holden L, Borgan O, Glad IK, Hovig E. Paulsen J, et al. Nucleic Acids Res. 2013 May 1;41(10):5164-74. doi: 10.1093/nar/gkt227. Epub 2013 Apr 9. Nucleic Acids Res. 2013. PMID: 23571755 Free PMC article.

3

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization.

Paulsen J, Sandve GK, Gundersen S, Lien TG, Trengereid K, Hovig E. Paulsen J, et al. Bioinformatics. 2014 Jun 1;30(11):1620-2. doi: 10.1093/bioinformatics/btu082. Epub 2014 Feb 7. Bioinformatics. 2014. PMID: 24511080 Free PMC article.

4

A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions.

Paulsen J, Rødland EA, Holden L, Holden M, Hovig E. Paulsen J, et al. Nucleic Acids Res. 2014 Oct;42(18):e143. doi: 10.1093/nar/gku738. Epub 2014 Aug 11. Nucleic Acids Res. 2014. PMID: 25114054 Free PMC article.

5

Galaxy Portal: interacting with the galaxy platform through mobile devices.

Børnich C, Grytten I, Hovig E, Paulsen J, Čech M, Sandve GK. Børnich C, et al. Among authors: paulsen j. Bioinformatics. 2016 Jun 1;32(11):1743-5. doi: 10.1093/bioinformatics/btw042. Epub 2016 Jan 27. Bioinformatics. 2016. PMID: 26819474 Free PMC article.

6

Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization.

Di Stefano M, Paulsen J, Lien TG, Hovig E, Micheletti C. Di Stefano M, et al. Among authors: paulsen j. Sci Rep. 2016 Oct 27;6:35985. doi: 10.1038/srep35985. Sci Rep. 2016. PMID: 27786255 Free PMC article.

7

The genome sequence of Atlantic cod reveals a unique immune system.

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS. Star B, et al. Among authors: paulsen j. Nature. 2011 Aug 10;477(7363):207-10. doi: 10.1038/nature10342. Nature. 2011. PMID: 21832995 Free PMC article.

8

Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes.

Nordstrand LM, Furu K, Paulsen J, Rognes T, Klungland A. Nordstrand LM, et al. Among authors: paulsen j. Nucleic Acids Res. 2012 Nov;40(21):10950-63. doi: 10.1093/nar/gks839. Epub 2012 Sep 10. Nucleic Acids Res. 2012. PMID: 22965116 Free PMC article.

9

Computational 3D genome modeling using Chrom3D.

Paulsen J, Liyakat Ali TM, Collas P. Paulsen J, et al. Nat Protoc. 2018 May;13(5):1137-1152. doi: 10.1038/nprot.2018.009. Epub 2018 Apr 26. Nat Protoc. 2018. PMID: 29700484

10

Manifold Based Optimization for Single-Cell 3D Genome Reconstruction.

Paulsen J, Gramstad O, Collas P. Paulsen J, et al. PLoS Comput Biol. 2015 Aug 11;11(8):e1004396. doi: 10.1371/journal.pcbi.1004396. eCollection 2015 Aug. PLoS Comput Biol. 2015. PMID: 26262780 Free PMC article.

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