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Nanopore sequencing and assembly of a human genome with ultra-long reads.
Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, Pedersen BS, Rhie A, Richardson H, Quinlan AR, Snutch TP, Tee L, Paten B, Phillippy AM, Simpson JT, Loman NJ, Loose M. Jain M, et al. Among authors: pedersen bs. Nat Biotechnol. 2018 Apr;36(4):338-345. doi: 10.1038/nbt.4060. Epub 2018 Jan 29. Nat Biotechnol. 2018. PMID: 29431738 Free PMC article.
cyvcf2: fast, flexible variant analysis with Python.
Pedersen BS, Quinlan AR. Pedersen BS, et al. Bioinformatics. 2017 Jun 15;33(12):1867-1869. doi: 10.1093/bioinformatics/btx057. Bioinformatics. 2017. PMID: 28165109 Free PMC article.
GIGGLE: a search engine for large-scale integrated genome analysis.
Layer RM, Pedersen BS, DiSera T, Marth GT, Gertz J, Quinlan AR. Layer RM, et al. Among authors: pedersen bs. Nat Methods. 2018 Feb;15(2):123-126. doi: 10.1038/nmeth.4556. Epub 2018 Jan 8. Nat Methods. 2018. PMID: 29309061 Free PMC article.
hts-nim: scripting high-performance genomic analyses.
Pedersen BS, Quinlan AR. Pedersen BS, et al. Bioinformatics. 2018 Oct 1;34(19):3387-3389. doi: 10.1093/bioinformatics/bty358. Bioinformatics. 2018. PMID: 29718142 Free PMC article.
100 results