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A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.
Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Blüthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novère N, Li P, Liebermeister W, Mo ML, Oliveira AP, Petranovic D, Pettifer S, Simeonidis E, Smallbone K, Spasić I, Weichart D, Brent R, Broomhead DS, Westerhoff HV, Kirdar B, Penttilä M, Klipp E, Palsson BØ, Sauer U, Oliver SG, Mendes P, Nielsen J, Kell DB. Herrgård MJ, et al. Among authors: penttila m. Nat Biotechnol. 2008 Oct;26(10):1155-60. doi: 10.1038/nbt1492. Nat Biotechnol. 2008. PMID: 18846089 Free PMC article.
Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains.
Canelas AB, Harrison N, Fazio A, Zhang J, Pitkänen JP, van den Brink J, Bakker BM, Bogner L, Bouwman J, Castrillo JI, Cankorur A, Chumnanpuen P, Daran-Lapujade P, Dikicioglu D, van Eunen K, Ewald JC, Heijnen JJ, Kirdar B, Mattila I, Mensonides FI, Niebel A, Penttilä M, Pronk JT, Reuss M, Salusjärvi L, Sauer U, Sherman D, Siemann-Herzberg M, Westerhoff H, de Winde J, Petranovic D, Oliver SG, Workman CT, Zamboni N, Nielsen J. Canelas AB, et al. Among authors: penttila m. Nat Commun. 2010;1:145. doi: 10.1038/ncomms1150. Nat Commun. 2010. PMID: 21266995 Free article.
Yeast systems biology.
Penttilä M, Nielsen J. Penttilä M, et al. FEMS Yeast Res. 2008 Feb;8(1):121. doi: 10.1111/j.1567-1364.2008.00350.x. FEMS Yeast Res. 2008. PMID: 18215226 No abstract available.
Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction.
Castillo S, Barth D, Arvas M, Pakula TM, Pitkänen E, Blomberg P, Seppanen-Laakso T, Nygren H, Sivasiddarthan D, Penttilä M, Oja M. Castillo S, et al. Among authors: penttila m. Biotechnol Biofuels. 2016 Nov 21;9:252. doi: 10.1186/s13068-016-0665-0. eCollection 2016. Biotechnol Biofuels. 2016. PMID: 27895706 Free PMC article.
Genome wide analysis of protein production load in Trichoderma reesei.
Pakula TM, Nygren H, Barth D, Heinonen M, Castillo S, Penttilä M, Arvas M. Pakula TM, et al. Among authors: penttila m. Biotechnol Biofuels. 2016 Jun 28;9:132. doi: 10.1186/s13068-016-0547-5. eCollection 2016. Biotechnol Biofuels. 2016. PMID: 27354857 Free PMC article.
Optimization of cDNA-AFLP experiments using genomic sequence data.
Kivioja T, Arvas M, Saloheimo M, Penttilä M, Ukkonen E. Kivioja T, et al. Among authors: penttila m. Bioinformatics. 2005 Jun 1;21(11):2573-9. doi: 10.1093/bioinformatics/bti393. Epub 2005 Mar 17. Bioinformatics. 2005. PMID: 15774551
315 results