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simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes.
Bioinformatics. 2016 May 1;32(9):1380-7. doi: 10.1093/bioinformatics/btv755. Epub 2015 Dec 26.
Bioinformatics. 2016.
PMID: 26708333
deepSimDEF: deep neural embeddings of gene products and gene ontology terms for functional analysis of genes.
Pesaranghader A, Matwin S, Sokolova M, Grenier JC, Beiko RG, Hussin J.
Pesaranghader A, et al.
Bioinformatics. 2022 May 26;38(11):3051-3061. doi: 10.1093/bioinformatics/btac304.
Bioinformatics. 2022.
PMID: 35536192
Free PMC article.
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deepBioWSD: effective deep neural word sense disambiguation of biomedical text data.
Pesaranghader A, Matwin S, Sokolova M, Pesaranghader A.
Pesaranghader A, et al.
J Am Med Inform Assoc. 2019 May 1;26(5):438-446. doi: 10.1093/jamia/ocy189.
J Am Med Inform Assoc. 2019.
PMID: 30811548
Free PMC article.
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Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages.
Mostefai F, Gamache I, N'Guessan A, Pelletier J, Huang J, Murall CL, Pesaranghader A, Gaonac'h-Lovejoy V, Hamelin DJ, Poujol R, Grenier JC, Smith M, Caron E, Craig M, Wolf G, Krishnaswamy S, Shapiro BJ, Hussin JG.
Mostefai F, et al. Among authors: pesaranghader a.
Front Med (Lausanne). 2022 Feb 21;9:826746. doi: 10.3389/fmed.2022.826746. eCollection 2022.
Front Med (Lausanne). 2022.
PMID: 35265640
Free PMC article.
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Implementing Machine Learning in Interventional Cardiology: The Benefits Are Worth the Trouble.
Ben Ali W, Pesaranghader A, Avram R, Overtchouk P, Perrin N, Laffite S, Cartier R, Ibrahim R, Modine T, Hussin JG.
Ben Ali W, et al. Among authors: pesaranghader a.
Front Cardiovasc Med. 2021 Dec 8;8:711401. doi: 10.3389/fcvm.2021.711401. eCollection 2021.
Front Cardiovasc Med. 2021.
PMID: 34957230
Free PMC article.
Review.
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Modeling electronic health record data using an end-to-end knowledge-graph-informed topic model.
Zou Y, Pesaranghader A, Song Z, Verma A, Buckeridge DL, Li Y.
Zou Y, et al. Among authors: pesaranghader a.
Sci Rep. 2022 Oct 25;12(1):17868. doi: 10.1038/s41598-022-22956-w.
Sci Rep. 2022.
PMID: 36284225
Free PMC article.
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