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Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
Prlic A, Kalro T, Bhattacharya R, Christie C, Burley SK, Rose PW. Prlic A, et al. Bioinformatics. 2016 Dec 15;32(24):3833-3835. doi: 10.1093/bioinformatics/btw547. Epub 2016 Aug 22. Bioinformatics. 2016. PMID: 27551105 Free PMC article.
To allow an interpretation of how PDB data relates to other publicly available annotations, we developed a novel data integration platform that maps 3D structural information across various datasets. ...AVAILABILITY AND IMPLEMENTATION: The new views are available from http …
To allow an interpretation of how PDB data relates to other publicly available annotations, we developed a novel data integration pla …
NGL viewer: web-based molecular graphics for large complexes.
Rose AS, Bradley AR, Valasatava Y, Duarte JM, Prlic A, Rose PW. Rose AS, et al. Among authors: prlic a. Bioinformatics. 2018 Nov 1;34(21):3755-3758. doi: 10.1093/bioinformatics/bty419. Bioinformatics. 2018. PMID: 29850778 Free PMC article.
The RCSB Protein Data Bank: redesigned web site and web services.
Rose PW, Beran B, Bi C, Bluhm WF, Dimitropoulos D, Goodsell DS, Prlic A, Quesada M, Quinn GB, Westbrook JD, Young J, Yukich B, Zardecki C, Berman HM, Bourne PE. Rose PW, et al. Among authors: prlic a. Nucleic Acids Res. 2011 Jan;39(Database issue):D392-401. doi: 10.1093/nar/gkq1021. Epub 2010 Oct 29. Nucleic Acids Res. 2011. PMID: 21036868 Free PMC article.
BioJava: an open-source framework for bioinformatics in 2012.
Prlić A, Yates A, Bliven SE, Rose PW, Jacobsen J, Troshin PV, Chapman M, Gao J, Koh CH, Foisy S, Holland R, Rimsa G, Heuer ML, Brandstätter-Müller H, Bourne PE, Willis S. Prlić A, et al. Bioinformatics. 2012 Oct 15;28(20):2693-5. doi: 10.1093/bioinformatics/bts494. Epub 2012 Aug 9. Bioinformatics. 2012. PMID: 22877863 Free PMC article.
The RCSB Protein Data Bank: new resources for research and education.
Rose PW, Bi C, Bluhm WF, Christie CH, Dimitropoulos D, Dutta S, Green RK, Goodsell DS, Prlic A, Quesada M, Quinn GB, Ramos AG, Westbrook JD, Young J, Zardecki C, Berman HM, Bourne PE. Rose PW, et al. Among authors: prlic a. Nucleic Acids Res. 2013 Jan;41(Database issue):D475-82. doi: 10.1093/nar/gks1200. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193259 Free PMC article.
Systematic detection of internal symmetry in proteins using CE-Symm.
Myers-Turnbull D, Bliven SE, Rose PW, Aziz ZK, Youkharibache P, Bourne PE, Prlić A. Myers-Turnbull D, et al. Among authors: prlic a. J Mol Biol. 2014 May 29;426(11):2255-68. doi: 10.1016/j.jmb.2014.03.010. Epub 2014 Mar 26. J Mol Biol. 2014. PMID: 24681267 Free PMC article.
53 results