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Data File Standard for Flow Cytometry, version FCS 3.1.
Spidlen J, Moore W, Parks D, Goldberg M, Bray C, Bierre P, Gorombey P, Hyun B, Hubbard M, Lange S, Lefebvre R, Leif R, Novo D, Ostruszka L, Treister A, Wood J, Murphy RF, Roederer M, Sudar D, Zigon R, Brinkman RR. Spidlen J, et al. Cytometry A. 2010 Jan;77(1):97-100. doi: 10.1002/cyto.a.20825. Cytometry A. 2010. PMID: 19937951 Free PMC article.
Gating-ML: XML-based gating descriptions in flow cytometry.
Spidlen J, Leif RC, Moore W, Roederer M; International Society for the Advancement of Cytometry Data Standards Task Force; Brinkman RR. Spidlen J, et al. Cytometry A. 2008 Dec;73A(12):1151-7. doi: 10.1002/cyto.a.20637. Cytometry A. 2008. PMID: 18773465 Free PMC article.
MIFlowCyt: the minimum information about a Flow Cytometry Experiment.
Lee JA, Spidlen J, Boyce K, Cai J, Crosbie N, Dalphin M, Furlong J, Gasparetto M, Goldberg M, Goralczyk EM, Hyun B, Jansen K, Kollmann T, Kong M, Leif R, McWeeney S, Moloshok TD, Moore W, Nolan G, Nolan J, Nikolich-Zugich J, Parrish D, Purcell B, Qian Y, Selvaraj B, Smith C, Tchuvatkina O, Wertheimer A, Wilkinson P, Wilson C, Wood J, Zigon R; International Society for Advancement of Cytometry Data Standards Task Force; Scheuermann RH, Brinkman RR. Lee JA, et al. Cytometry A. 2008 Oct;73(10):926-30. doi: 10.1002/cyto.a.20623. Cytometry A. 2008. PMID: 18752282 Free PMC article.
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.
Taylor CF, Field D, Sansone SA, Aerts J, Apweiler R, Ashburner M, Ball CA, Binz PA, Bogue M, Booth T, Brazma A, Brinkman RR, Michael Clark A, Deutsch EW, Fiehn O, Fostel J, Ghazal P, Gibson F, Gray T, Grimes G, Hancock JM, Hardy NW, Hermjakob H, Julian RK Jr, Kane M, Kettner C, Kinsinger C, Kolker E, Kuiper M, Le Novère N, Leebens-Mack J, Lewis SE, Lord P, Mallon AM, Marthandan N, Masuya H, McNally R, Mehrle A, Morrison N, Orchard S, Quackenbush J, Reecy JM, Robertson DG, Rocca-Serra P, Rodriguez H, Rosenfelder H, Santoyo-Lopez J, Scheuermann RH, Schober D, Smith B, Snape J, Stoeckert CJ Jr, Tipton K, Sterk P, Untergasser A, Vandesompele J, Wiemann S. Taylor CF, et al. Nat Biotechnol. 2008 Aug;26(8):889-96. doi: 10.1038/nbt.1411. Nat Biotechnol. 2008. PMID: 18688244 Free PMC article.
Using flowViz to visualize flow cytometry data.
Sarkar D, Le Meur N, Gentleman R. Sarkar D, et al. Bioinformatics. 2008 Mar 15;24(6):878-9. doi: 10.1093/bioinformatics/btn021. Epub 2008 Feb 1. Bioinformatics. 2008. PMID: 18245128 Free PMC article.