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Page 1
Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank.
Baskaran K, Ploskon E, Tejero R, Yokochi M, Harrus D, Liang Y, Peisach E, Persikova I, Ramelot TA, Sekharan M, Tolchard J, Westbrook JD, Bardiaux B, Schwieters CD, Patwardhan A, Velankar S, Burley SK, Kurisu G, Hoch JC, Montelione GT, Vuister GW, Young JY. Baskaran K, et al. bioRxiv [Preprint]. 2024 Jan 22:2024.01.15.575520. doi: 10.1101/2024.01.15.575520. bioRxiv. 2024. PMID: 38328042 Free PMC article. Updated. Preprint.
EMDB-the Electron Microscopy Data Bank.
wwPDB Consortium. wwPDB Consortium. Nucleic Acids Res. 2024 Jan 5;52(D1):D456-D465. doi: 10.1093/nar/gkad1019. Nucleic Acids Res. 2024. PMID: 37994703 Free PMC article. Review.
Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions.
Mészáros B, Hatos A, Palopoli N, Quaglia F, Salladini E, Van Roey K, Arthanari H, Dosztányi Z, Felli IC, Fischer PD, Hoch JC, Jeffries CM, Longhi S, Maiani E, Orchard S, Pancsa R, Papaleo E, Pierattelli R, Piovesan D, Pritisanac I, Tenorio L, Viennet T, Tompa P, Vranken W, Tosatto SCE, Davey NE. Mészáros B, et al. Nat Methods. 2023 Sep;20(9):1291-1303. doi: 10.1038/s41592-023-01915-x. Epub 2023 Jul 3. Nat Methods. 2023. PMID: 37400558 Review.
ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.
Vallat B, Tauriello G, Bienert S, Haas J, Webb BM, Žídek A, Zheng W, Peisach E, Piehl DW, Anischanka I, Sillitoe I, Tolchard J, Varadi M, Baker D, Orengo C, Zhang Y, Hoch JC, Kurisu G, Patwardhan A, Velankar S, Burley SK, Sali A, Schwede T, Berman HM, Westbrook JD. Vallat B, et al. J Mol Biol. 2023 Jul 15;435(14):168021. doi: 10.1016/j.jmb.2023.168021. Epub 2023 Feb 23. J Mol Biol. 2023. PMID: 36828268 Free article.
Biological Magnetic Resonance Data Bank.
Hoch JC, Baskaran K, Burr H, Chin J, Eghbalnia HR, Fujiwara T, Gryk MR, Iwata T, Kojima C, Kurisu G, Maziuk D, Miyanoiri Y, Wedell JR, Wilburn C, Yao H, Yokochi M. Hoch JC, et al. Nucleic Acids Res. 2023 Jan 6;51(D1):D368-D376. doi: 10.1093/nar/gkac1050. Nucleic Acids Res. 2023. PMID: 36478084 Free PMC article.
Human Readability of Data Files.
Gryk MR. Gryk MR. Balisage Ser Markup Technol. 2022 Aug;27:10.4242/balisagevol27.gryk01. doi: 10.4242/balisagevol27.gryk01. Balisage Ser Markup Technol. 2022. PMID: 38650826 Free PMC article.
NMR and Metabolomics-A Roadmap for the Future.
Wishart DS, Cheng LL, Copié V, Edison AS, Eghbalnia HR, Hoch JC, Gouveia GJ, Pathmasiri W, Powers R, Schock TB, Sumner LW, Uchimiya M. Wishart DS, et al. Metabolites. 2022 Jul 23;12(8):678. doi: 10.3390/metabo12080678. Metabolites. 2022. PMID: 35893244 Free PMC article. Review.
Merging NMR Data and Computation Facilitates Data-Centered Research.
Baskaran K, Craft DL, Eghbalnia HR, Gryk MR, Hoch JC, Maciejewski MW, Schuyler AD, Wedell JR, Wilburn CW. Baskaran K, et al. Front Mol Biosci. 2022 Jan 17;8:817175. doi: 10.3389/fmolb.2021.817175. eCollection 2021. Front Mol Biosci. 2022. PMID: 35111815 Free PMC article. Review.
Deconstructing the STAR File Format.
Gryk MR. Gryk MR. Balisage Ser Markup Technol. 2021 Aug;26:10.4242/balisagevol26.gryk01. doi: 10.4242/balisagevol26.gryk01. Balisage Ser Markup Technol. 2021. PMID: 36312518 Free PMC article.
44 results