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DNA methylation patterns in luminal breast cancers differ from non-luminal subtypes and can identify relapse risk independent of other clinical variables.
Kamalakaran S, Varadan V, Giercksky Russnes HE, Levy D, Kendall J, Janevski A, Riggs M, Banerjee N, Synnestvedt M, Schlichting E, Kåresen R, Shama Prasada K, Rotti H, Rao R, Rao L, Eric Tang MH, Satyamoorthy K, Lucito R, Wigler M, Dimitrova N, Naume B, Borresen-Dale AL, Hicks JB. Kamalakaran S, et al. Among authors: riggs m. Mol Oncol. 2011 Feb;5(1):77-92. doi: 10.1016/j.molonc.2010.11.002. Epub 2010 Dec 2. Mol Oncol. 2011. PMID: 21169070 Free PMC article.
Methylation detection oligonucleotide microarray analysis: a high-resolution method for detection of CpG island methylation.
Kamalakaran S, Kendall J, Zhao X, Tang C, Khan S, Ravi K, Auletta T, Riggs M, Wang Y, Helland A, Naume B, Dimitrova N, Børresen-Dale AL, Hicks J, Lucito R. Kamalakaran S, et al. Among authors: riggs m. Nucleic Acids Res. 2009 Jul;37(12):e89. doi: 10.1093/nar/gkp413. Epub 2009 May 27. Nucleic Acids Res. 2009. PMID: 19474344 Free PMC article.
Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing.
Baslan T, Kendall J, Volyanskyy K, McNamara K, Cox H, D'Italia S, Ambrosio F, Riggs M, Rodgers L, Leotta A, Song J, Mao Y, Wu J, Shah R, Gularte-Mérida R, Chadalavada K, Nanjangud G, Varadan V, Gordon A, Curtis C, Krasnitz A, Dimitrova N, Harris L, Wigler M, Hicks J. Baslan T, et al. Among authors: riggs m. Elife. 2020 May 13;9:e51480. doi: 10.7554/eLife.51480. Elife. 2020. PMID: 32401198 Free PMC article.
Novel patterns of genome rearrangement and their association with survival in breast cancer.
Hicks J, Krasnitz A, Lakshmi B, Navin NE, Riggs M, Leibu E, Esposito D, Alexander J, Troge J, Grubor V, Yoon S, Wigler M, Ye K, Børresen-Dale AL, Naume B, Schlicting E, Norton L, Hägerström T, Skoog L, Auer G, Månér S, Lundin P, Zetterberg A. Hicks J, et al. Among authors: riggs m. Genome Res. 2006 Dec;16(12):1465-79. doi: 10.1101/gr.5460106. Genome Res. 2006. PMID: 17142309 Free PMC article.
Optimizing sparse sequencing of single cells for highly multiplex copy number profiling.
Baslan T, Kendall J, Ward B, Cox H, Leotta A, Rodgers L, Riggs M, D'Italia S, Sun G, Yong M, Miskimen K, Gilmore H, Saborowski M, Dimitrova N, Krasnitz A, Harris L, Wigler M, Hicks J. Baslan T, et al. Among authors: riggs m. Genome Res. 2015 May;25(5):714-24. doi: 10.1101/gr.188060.114. Epub 2015 Apr 9. Genome Res. 2015. PMID: 25858951 Free PMC article.
Inferring tumor progression from genomic heterogeneity.
Navin N, Krasnitz A, Rodgers L, Cook K, Meth J, Kendall J, Riggs M, Eberling Y, Troge J, Grubor V, Levy D, Lundin P, Månér S, Zetterberg A, Hicks J, Wigler M. Navin N, et al. Among authors: riggs m. Genome Res. 2010 Jan;20(1):68-80. doi: 10.1101/gr.099622.109. Epub 2009 Nov 10. Genome Res. 2010. PMID: 19903760 Free PMC article.
High-resolution ROMA CGH and FISH analysis of aneuploid and diploid breast tumors.
Hicks J, Muthuswamy L, Krasnitz A, Navin N, Riggs M, Grubor V, Esposito D, Alexander J, Troge J, Wigler M, Maner S, Lundin P, Zetterberg A. Hicks J, et al. Among authors: riggs m. Cold Spring Harb Symp Quant Biol. 2005;70:51-63. doi: 10.1101/sqb.2005.70.055. Cold Spring Harb Symp Quant Biol. 2005. PMID: 16869738
Genome-wide copy number analysis of single cells.
Baslan T, Kendall J, Rodgers L, Cox H, Riggs M, Stepansky A, Troge J, Ravi K, Esposito D, Lakshmi B, Wigler M, Navin N, Hicks J. Baslan T, et al. Among authors: riggs m. Nat Protoc. 2012 May 3;7(6):1024-41. doi: 10.1038/nprot.2012.039. Nat Protoc. 2012. PMID: 22555242 Free PMC article.
298 results