Rivera-Mulia JC - Search Results

1

Replication Domains: Genome Compartmentalization into Functional Replication Units.

Zhao PA, Rivera-Mulia JC, Gilbert DM. Zhao PA, et al. Adv Exp Med Biol. 2017;1042:229-257. doi: 10.1007/978-981-10-6955-0_11. Adv Exp Med Biol. 2017. PMID: 29357061 Review.

2

Copy number variation is a fundamental aspect of the placental genome.

Hannibal RL, Chuong EB, Rivera-Mulia JC, Gilbert DM, Valouev A, Baker JC. Hannibal RL, et al. PLoS Genet. 2014 May 1;10(5):e1004290. doi: 10.1371/journal.pgen.1004290. eCollection 2014 May. PLoS Genet. 2014. PMID: 24785991 Free PMC article.

3

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells.

Rivera-Mulia JC, Buckley Q, Sasaki T, Zimmerman J, Didier RA, Nazor K, Loring JF, Lian Z, Weissman S, Robins AJ, Schulz TC, Menendez L, Kulik MJ, Dalton S, Gabr H, Kahveci T, Gilbert DM. Rivera-Mulia JC, et al. Genome Res. 2015 Aug;25(8):1091-103. doi: 10.1101/gr.187989.114. Epub 2015 Jun 8. Genome Res. 2015. PMID: 26055160 Free PMC article.

4

Computing interaction probabilities in signaling networks.

Gabr H, Rivera-Mulia JC, Gilbert DM, Kahveci T. Gabr H, et al. EURASIP J Bioinform Syst Biol. 2015 Nov 11;2015(1):10. doi: 10.1186/s13637-015-0031-8. eCollection 2015 Dec. EURASIP J Bioinform Syst Biol. 2015. PMID: 26587014 Free PMC article.

5

Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.

Dileep V, Rivera-Mulia JC, Sima J, Gilbert DM. Dileep V, et al. Cold Spring Harb Symp Quant Biol. 2015;80:53-63. doi: 10.1101/sqb.2015.80.027284. Epub 2015 Nov 20. Cold Spring Harb Symp Quant Biol. 2015. PMID: 26590169 Review.

6

Replication timing and transcriptional control: beyond cause and effect-part III.

Rivera-Mulia JC, Gilbert DM. Rivera-Mulia JC, et al. Curr Opin Cell Biol. 2016 Jun;40:168-178. doi: 10.1016/j.ceb.2016.03.022. Epub 2016 Apr 23. Curr Opin Cell Biol. 2016. PMID: 27115331 Free PMC article. Review.

7

Replicating Large Genomes: Divide and Conquer.

Rivera-Mulia JC, Gilbert DM. Rivera-Mulia JC, et al. Mol Cell. 2016 Jun 2;62(5):756-65. doi: 10.1016/j.molcel.2016.05.007. Mol Cell. 2016. PMID: 27259206 Free PMC article. Review.

8

Stability of patient-specific features of altered DNA replication timing in xenografts of primary human acute lymphoblastic leukemia.

Sasaki T, Rivera-Mulia JC, Vera D, Zimmerman J, Das S, Padget M, Nakamichi N, Chang BH, Tyner J, Druker BJ, Weng AP, Civin CI, Eaves CJ, Gilbert DM. Sasaki T, et al. Exp Hematol. 2017 Jul;51:71-82.e3. doi: 10.1016/j.exphem.2017.04.004. Epub 2017 Apr 19. Exp Hematol. 2017. PMID: 28433605 Free PMC article.

9

DNA replication timing alterations identify common markers between distinct progeroid diseases.

Rivera-Mulia JC, Desprat R, Trevilla-Garcia C, Cornacchia D, Schwerer H, Sasaki T, Sima J, Fells T, Studer L, Lemaitre JM, Gilbert DM. Rivera-Mulia JC, et al. Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):E10972-E10980. doi: 10.1073/pnas.1711613114. Epub 2017 Dec 1. Proc Natl Acad Sci U S A. 2017. PMID: 29196523 Free PMC article.

10

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.

Marchal C, Sasaki T, Vera D, Wilson K, Sima J, Rivera-Mulia JC, Trevilla-García C, Nogues C, Nafie E, Gilbert DM. Marchal C, et al. Nat Protoc. 2018 May;13(5):819-839. doi: 10.1038/nprot.2017.148. Epub 2018 Mar 29. Nat Protoc. 2018. PMID: 29599440 Free PMC article.

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