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CRONOS: the cross-reference navigation server.
Waegele B, Dunger-Kaltenbach I, Fobo G, Montrone C, Mewes HW, Ruepp A. Waegele B, et al. Among authors: ruepp a. Bioinformatics. 2009 Jan 1;25(1):141-3. doi: 10.1093/bioinformatics/btn590. Epub 2008 Nov 13. Bioinformatics. 2009. PMID: 19010804 Free PMC article.
MIPS: analysis and annotation of proteins from whole genomes.
Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, Mannhaupt G, Münsterkötter M, Pagel P, Strack N, Stümpflen V, Warfsmann J, Ruepp A. Mewes HW, et al. Among authors: ruepp a. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D41-4. doi: 10.1093/nar/gkh092. Nucleic Acids Res. 2004. PMID: 14681354 Free PMC article.
The MIPS mammalian protein-protein interaction database.
Pagel P, Kovac S, Oesterheld M, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Mark P, Stümpflen V, Mewes HW, Ruepp A, Frishman D. Pagel P, et al. Among authors: ruepp a. Bioinformatics. 2005 Mar;21(6):832-4. doi: 10.1093/bioinformatics/bti115. Epub 2004 Nov 5. Bioinformatics. 2005. PMID: 15531608
MIPS bacterial genomes functional annotation benchmark dataset.
Tetko IV, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Fobo G, Ruepp A, Antonov AV, Surmeli D, Mewes HW. Tetko IV, et al. Among authors: ruepp a. Bioinformatics. 2005 May 15;21(10):2520-1. doi: 10.1093/bioinformatics/bti380. Epub 2005 Mar 15. Bioinformatics. 2005. PMID: 15769832
Super paramagnetic clustering of protein sequences.
Tetko IV, Facius A, Ruepp A, Mewes HW. Tetko IV, et al. Among authors: ruepp a. BMC Bioinformatics. 2005 Apr 1;6:82. doi: 10.1186/1471-2105-6-82. BMC Bioinformatics. 2005. PMID: 15804359 Free PMC article.
MIPS: analysis and annotation of proteins from whole genomes in 2005.
Mewes HW, Frishman D, Mayer KF, Münsterkötter M, Noubibou O, Pagel P, Rattei T, Oesterheld M, Ruepp A, Stümpflen V. Mewes HW, et al. Among authors: ruepp a. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D169-72. doi: 10.1093/nar/gkj148. Nucleic Acids Res. 2006. PMID: 16381839 Free PMC article.
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.
Ruepp A, Doudieu ON, van den Oever J, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Skornia C, Wanka S, Rattei T, Pagel P, Riley L, Frishman D, Surmeli D, Tetko IV, Oesterheld M, Stümpflen V, Mewes HW. Ruepp A, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D568-71. doi: 10.1093/nar/gkj074. Nucleic Acids Res. 2006. PMID: 16381934 Free PMC article.
CORUM: the comprehensive resource of mammalian protein complexes.
Ruepp A, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Stransky M, Waegele B, Schmidt T, Doudieu ON, Stümpflen V, Mewes HW. Ruepp A, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D646-50. doi: 10.1093/nar/gkm936. Epub 2007 Oct 26. Nucleic Acids Res. 2008. PMID: 17965090 Free PMC article.
MIPS: analysis and annotation of genome information in 2007.
Mewes HW, Dietmann S, Frishman D, Gregory R, Mannhaupt G, Mayer KF, Münsterkötter M, Ruepp A, Spannagl M, Stümpflen V, Rattei T. Mewes HW, et al. Among authors: ruepp a. Nucleic Acids Res. 2008 Jan;36(Database issue):D196-201. doi: 10.1093/nar/gkm980. Epub 2007 Dec 23. Nucleic Acids Res. 2008. PMID: 18158298 Free PMC article.
61 results