Rye M - Search Results

1

ClusTrack: feature extraction and similarity measures for clustering of genome-wide data sets.

Rydbeck H, Sandve GK, Ferkingstad E, Simovski B, Rye M, Hovig E. Rydbeck H, et al. Among authors: rye m. PLoS One. 2015 Apr 16;10(4):e0123261. doi: 10.1371/journal.pone.0123261. eCollection 2015. PLoS One. 2015. PMID: 25879845 Free PMC article.

2

The statistical geometry of transcriptome divergence in cell-type evolution and cancer.

Liang C; FANTOM Consortium; Forrest AR, Wagner GP. Liang C, et al. Nat Commun. 2015 Jan 14;6:6066. doi: 10.1038/ncomms7066. Nat Commun. 2015. PMID: 25585899 Free article.

3

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome.

Hurst LD, Ghanbarian AT, Forrest AR; FANTOM consortium; Huminiecki L. Hurst LD, et al. PLoS Biol. 2015 Dec 18;13(12):e1002315. doi: 10.1371/journal.pbio.1002315. eCollection 2015 Dec. PLoS Biol. 2015. PMID: 26685068 Free PMC article.

4

The Genomic HyperBrowser: an analysis web server for genome-scale data.

Sandve GK, Gundersen S, Johansen M, Glad IK, Gunathasan K, Holden L, Holden M, Liestøl K, Nygård S, Nygaard V, Paulsen J, Rydbeck H, Trengereid K, Clancy T, Drabløs F, Ferkingstad E, Kalas M, Lien T, Rye MB, Frigessi A, Hovig E. Sandve GK, et al. Among authors: rye mb. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W133-41. doi: 10.1093/nar/gkt342. Epub 2013 Apr 30. Nucleic Acids Res. 2013. PMID: 23632163 Free PMC article.

5

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.

Rye M, Sandve GK, Daub CO, Kawaji H, Carninci P, Forrest AR, Drabløs F; FANTOM consortium. Rye M, et al. BMC Genomics. 2014 Mar 26;15:120. doi: 10.1186/1471-2164-15-120. BMC Genomics. 2014. PMID: 24669905 Free PMC article.

6

Norwegian e-Infrastructure for Life Sciences (NeLS).

Tekle KM, Gundersen S, Klepper K, Bongo LA, Raknes IA, Li X, Zhang W, Andreetta C, Mulugeta TD, Kalaš M, Rye MB, Hjerde E, Antony Samy JK, Fornous G, Azab A, Våge DI, Hovig E, Willassen NP, Drabløs F, Nygård S, Petersen K, Jonassen I. Tekle KM, et al. Among authors: rye mb. F1000Res. 2018 Jun 29;7:ELIXIR-968. doi: 10.12688/f1000research.15119.1. eCollection 2018. F1000Res. 2018. PMID: 30271575 Free PMC article. Review.

7

Clonal evolution after treatment pressure in multiple myeloma: heterogenous genomic aberrations and transcriptomic convergence.

Misund K, Hofste Op Bruinink D, Coward E, Hoogenboezem RM, Rustad EH, Sanders MA, Rye M, Sponaas AM, van der Holt B, Zweegman S, Hovig E, Meza-Zepeda LA, Sundan A, Myklebost O, Sonneveld P, Waage A. Misund K, et al. Among authors: rye m. Leukemia. 2022 Jul;36(7):1887-1897. doi: 10.1038/s41375-022-01597-y. Epub 2022 May 28. Leukemia. 2022. PMID: 35643867 Free PMC article.

8

A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites.

Håndstad T, Rye MB, Drabløs F, Sætrom P. Håndstad T, et al. PLoS One. 2011 Apr 14;6(4):e18430. doi: 10.1371/journal.pone.0018430. PLoS One. 2011. PMID: 21533218 Free PMC article.

9

DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis.

Rauluseviciute I, Drabløs F, Rye MB. Rauluseviciute I, et al. Clin Epigenetics. 2019 Dec 12;11(1):193. doi: 10.1186/s13148-019-0795-x. Clin Epigenetics. 2019. PMID: 31831061 Free PMC article. Review.

10

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.

Rye M, Sætrom P, Håndstad T, Drabløs F. Rye M, et al. BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80. BMC Biol. 2011. PMID: 22115494 Free PMC article.

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