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Unsupervised High-Dimensional Analysis Aligns Dendritic Cells across Tissues and Species.
Guilliams M, Dutertre CA, Scott CL, McGovern N, Sichien D, Chakarov S, Van Gassen S, Chen J, Poidinger M, De Prijck S, Tavernier SJ, Low I, Irac SE, Mattar CN, Sumatoh HR, Low GHL, Chung TJK, Chan DKH, Tan KK, Hon TLK, Fossum E, Bogen B, Choolani M, Chan JKY, Larbi A, Luche H, Henri S, Saeys Y, Newell EW, Lambrecht BN, Malissen B, Ginhoux F. Guilliams M, et al. Among authors: saeys y. Immunity. 2016 Sep 20;45(3):669-684. doi: 10.1016/j.immuni.2016.08.015. Epub 2016 Sep 13. Immunity. 2016. PMID: 27637149 Free PMC article.
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.
Sonrel A, Luetge A, Soneson C, Mallona I, Germain PL, Knyazev S, Gilis J, Gerber R, Seurinck R, Paul D, Sonder E, Crowell HL, Fanaswala I, Al-Ajami A, Heidari E, Schmeing S, Milosavljevic S, Saeys Y, Mangul S, Robinson MD. Sonrel A, et al. Among authors: saeys y. Genome Biol. 2023 May 17;24(1):119. doi: 10.1186/s13059-023-02962-5. Genome Biol. 2023. PMID: 37198712 Free PMC article.
A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis.
Nguyen TH, Thiers L, Van Moerkercke A, Bai Y, Fernández-Calvo P, Minne M, Depuydt T, Colinas M, Verstaen K, Van Isterdael G, Nützmann HW, Osbourn A, Saeys Y, De Rybel B, Vandepoele K, Ritter A, Goossens A. Nguyen TH, et al. Among authors: saeys y. Nat Plants. 2023 Jun;9(6):926-937. doi: 10.1038/s41477-023-01419-8. Epub 2023 May 15. Nat Plants. 2023. PMID: 37188853
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes.
Aghaeepour N, Chattopadhyay P, Chikina M, Dhaene T, Van Gassen S, Kursa M, Lambrecht BN, Malek M, McLachlan GJ, Qian Y, Qiu P, Saeys Y, Stanton R, Tong D, Vens C, Walkowiak S, Wang K, Finak G, Gottardo R, Mosmann T, Nolan GP, Scheuermann RH, Brinkman RR. Aghaeepour N, et al. Among authors: saeys y. Cytometry A. 2016 Jan;89(1):16-21. doi: 10.1002/cyto.a.22732. Epub 2015 Oct 8. Cytometry A. 2016. PMID: 26447924 Free PMC article.
167 results