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COPASI--a COmplex PAthway SImulator.
Hoops S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, Singhal M, Xu L, Mendes P, Kummer U. Hoops S, et al. Among authors: sahle s. Bioinformatics. 2006 Dec 15;22(24):3067-74. doi: 10.1093/bioinformatics/btl485. Epub 2006 Oct 10. Bioinformatics. 2006. PMID: 17032683
A model diagram layout extension for SBML.
Gauges R, Rost U, Sahle S, Wegner K. Gauges R, et al. Among authors: sahle s. Bioinformatics. 2006 Aug 1;22(15):1879-85. doi: 10.1093/bioinformatics/btl195. Epub 2006 May 18. Bioinformatics. 2006. PMID: 16709586
SYCAMORE--a systems biology computational analysis and modeling research environment.
Weidemann A, Richter S, Stein M, Sahle S, Gauges R, Gabdoulline R, Surovtsova I, Semmelrock N, Besson B, Rojas I, Wade R, Kummer U. Weidemann A, et al. Among authors: sahle s. Bioinformatics. 2008 Jun 15;24(12):1463-4. doi: 10.1093/bioinformatics/btn207. Epub 2008 May 7. Bioinformatics. 2008. PMID: 18463116
The Systems Biology Graphical Notation.
Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H. Le Novère N, et al. Among authors: sahle s. Nat Biotechnol. 2009 Aug;27(8):735-41. doi: 10.1038/nbt.1558. Epub 2009 Aug 7. Nat Biotechnol. 2009. PMID: 19668183 Free article.
Applications and trends in systems biology in biochemistry.
Hübner K, Sahle S, Kummer U. Hübner K, et al. Among authors: sahle s. FEBS J. 2011 Aug;278(16):2767-857. doi: 10.1111/j.1742-4658.2011.08217.x. Epub 2011 Jul 26. FEBS J. 2011. PMID: 21707921 Free article. Review.
46 results