Salit M - Search Results

1

Synthetic spike-in standards for RNA-seq experiments.

Jiang L, Schlesinger F, Davis CA, Zhang Y, Li R, Salit M, Gingeras TR, Oliver B. Jiang L, et al. Among authors: salit m. Genome Res. 2011 Sep;21(9):1543-51. doi: 10.1101/gr.121095.111. Epub 2011 Aug 4. Genome Res. 2011. PMID: 21816910 Free PMC article.

2

Mediation of Drosophila autosomal dosage effects and compensation by network interactions.

Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B. Malone JH, et al. Among authors: salit m. Genome Biol. 2012 Apr 24;13(4):r28. doi: 10.1186/gb-2012-13-4-r28. Genome Biol. 2012. PMID: 22531030 Free PMC article.

3

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.

Munro SA, Lund SP, Pine PS, Binder H, Clevert DA, Conesa A, Dopazo J, Fasold M, Hochreiter S, Hong H, Jafari N, Kreil DP, Łabaj PP, Li S, Liao Y, Lin SM, Meehan J, Mason CE, Santoyo-Lopez J, Setterquist RA, Shi L, Shi W, Smyth GK, Stralis-Pavese N, Su Z, Tong W, Wang C, Wang J, Xu J, Ye Z, Yang Y, Yu Y, Salit M. Munro SA, et al. Among authors: salit m. Nat Commun. 2014 Sep 25;5:5125. doi: 10.1038/ncomms6125. Nat Commun. 2014. PMID: 25254650 Free article.

4

Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design.

Pine PS, Munro SA, Parsons JR, McDaniel J, Lucas AB, Lozach J, Myers TG, Su Q, Jacobs-Helber SM, Salit M. Pine PS, et al. Among authors: salit m. BMC Biotechnol. 2016 Jun 24;16(1):54. doi: 10.1186/s12896-016-0281-x. BMC Biotechnol. 2016. PMID: 27342544 Free PMC article.

5

External RNA Controls Consortium Beta Version Update.

Lee H, Pine PS, McDaniel J, Salit M, Oliver B. Lee H, et al. Among authors: salit m. J Genomics. 2016 Jul 26;4:19-22. doi: 10.7150/jgen.16082. eCollection 2016. J Genomics. 2016. PMID: 27512518 Free PMC article.

6

Standards in gene expression microarray experiments.

Salit M. Salit M. Methods Enzymol. 2006;411:63-78. doi: 10.1016/S0076-6879(06)11005-8. Methods Enzymol. 2006. PMID: 16939786 Review.

7

Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays.

Lu J, Lee JC, Salit ML, Cam MC. Lu J, et al. BMC Bioinformatics. 2007 Mar 29;8:108. doi: 10.1186/1471-2105-8-108. BMC Bioinformatics. 2007. PMID: 17394657 Free PMC article.

8

Characterization of in vitro transcription amplification linearity and variability in the low copy number regime using External RNA Control Consortium (ERCC) spike-ins.

Kralj JG, Salit ML. Kralj JG, et al. Anal Bioanal Chem. 2013 Jan;405(1):315-20. doi: 10.1007/s00216-012-6445-1. Epub 2012 Oct 20. Anal Bioanal Chem. 2013. PMID: 23086083

9

Using mixtures of biological samples as process controls for RNA-sequencing experiments.

Parsons J, Munro S, Pine PS, McDaniel J, Mehaffey M, Salit M. Parsons J, et al. Among authors: salit m. BMC Genomics. 2015 Sep 17;16(1):708. doi: 10.1186/s12864-015-1912-7. BMC Genomics. 2015. PMID: 26383878 Free PMC article.

10

Medical implications of technical accuracy in genome sequencing.

Goldfeder RL, Priest JR, Zook JM, Grove ME, Waggott D, Wheeler MT, Salit M, Ashley EA. Goldfeder RL, et al. Among authors: salit m. Genome Med. 2016 Mar 2;8(1):24. doi: 10.1186/s13073-016-0269-0. Genome Med. 2016. PMID: 26932475 Free PMC article.

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