Sandberg R - Search Results

1

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data.

Ramsköld D, Wang ET, Burge CB, Sandberg R. Ramsköld D, et al. Among authors: sandberg r. PLoS Comput Biol. 2009 Dec;5(12):e1000598. doi: 10.1371/journal.pcbi.1000598. Epub 2009 Dec 11. PLoS Comput Biol. 2009. PMID: 20011106 Free PMC article.

2

Assessment of tumor characteristic gene expression in cell lines using a tissue similarity index (TSI).

Sandberg R, Ernberg I. Sandberg R, et al. Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2052-7. doi: 10.1073/pnas.0408105102. Epub 2005 Jan 25. Proc Natl Acad Sci U S A. 2005. PMID: 15671165 Free PMC article.

3

The molecular portrait of in vitro growth by meta-analysis of gene-expression profiles.

Sandberg R, Ernberg I. Sandberg R, et al. Genome Biol. 2005;6(8):R65. doi: 10.1186/gb-2005-6-8-r65. Epub 2005 Jul 27. Genome Biol. 2005. PMID: 16086847 Free PMC article.

4

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs.

Nielsen CB, Shomron N, Sandberg R, Hornstein E, Kitzman J, Burge CB. Nielsen CB, et al. Among authors: sandberg r. RNA. 2007 Nov;13(11):1894-910. doi: 10.1261/rna.768207. Epub 2007 Sep 13. RNA. 2007. PMID: 17872505 Free PMC article.

5

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB. Sandberg R, et al. Science. 2008 Jun 20;320(5883):1643-7. doi: 10.1126/science.1155390. Science. 2008. PMID: 18566288 Free PMC article.

6

Alternative isoform regulation in human tissue transcriptomes.

Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Wang ET, et al. Among authors: sandberg r. Nature. 2008 Nov 27;456(7221):470-6. doi: 10.1038/nature07509. Nature. 2008. PMID: 18978772 Free PMC article.

7

Sequentially acting Sox transcription factors in neural lineage development.

Bergsland M, Ramsköld D, Zaouter C, Klum S, Sandberg R, Muhr J. Bergsland M, et al. Among authors: sandberg r. Genes Dev. 2011 Dec 1;25(23):2453-64. doi: 10.1101/gad.176008.111. Epub 2011 Nov 15. Genes Dev. 2011. PMID: 22085726 Free PMC article.

8

How to analyze gene expression using RNA-sequencing data.

Ramsköld D, Kavak E, Sandberg R. Ramsköld D, et al. Among authors: sandberg r. Methods Mol Biol. 2012;802:259-74. doi: 10.1007/978-1-61779-400-1_17. Methods Mol Biol. 2012. PMID: 22130886

9

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.

Ramsköld D, Luo S, Wang YC, Li R, Deng Q, Faridani OR, Daniels GA, Khrebtukova I, Loring JF, Laurent LC, Schroth GP, Sandberg R. Ramsköld D, et al. Among authors: sandberg r. Nat Biotechnol. 2012 Aug;30(8):777-82. doi: 10.1038/nbt.2282. Nat Biotechnol. 2012. PMID: 22820318 Free PMC article.

10

Non-canonical Notch signaling activates IL-6/JAK/STAT signaling in breast tumor cells and is controlled by p53 and IKKα/IKKβ.

Jin S, Mutvei AP, Chivukula IV, Andersson ER, Ramsköld D, Sandberg R, Lee KL, Kronqvist P, Mamaeva V, Ostling P, Mpindi JP, Kallioniemi O, Screpanti I, Poellinger L, Sahlgren C, Lendahl U. Jin S, et al. Among authors: sandberg r. Oncogene. 2013 Oct 10;32(41):4892-902. doi: 10.1038/onc.2012.517. Epub 2012 Nov 26. Oncogene. 2013. PMID: 23178494 Free PMC article.

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