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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: sauro hm. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808
The SBW-MATLAB interface.
Wellock C, Chickarmane V, Sauro HM. Wellock C, et al. Among authors: sauro hm. Bioinformatics. 2005 Mar;21(6):823-4. doi: 10.1093/bioinformatics/bti110. Epub 2004 Nov 5. Bioinformatics. 2005. PMID: 15531613
Bifurcation discovery tool.
Chickarmane V, Paladugu SR, Bergmann F, Sauro HM. Chickarmane V, et al. Among authors: sauro hm. Bioinformatics. 2005 Sep 15;21(18):3688-90. doi: 10.1093/bioinformatics/bti603. Epub 2005 Aug 4. Bioinformatics. 2005. PMID: 16081475
Conservation analysis of large biochemical networks.
Vallabhajosyula RR, Chickarmane V, Sauro HM. Vallabhajosyula RR, et al. Among authors: sauro hm. Bioinformatics. 2006 Feb 1;22(3):346-53. doi: 10.1093/bioinformatics/bti800. Epub 2005 Nov 29. Bioinformatics. 2006. PMID: 16317075
Minimum information requested in the annotation of biochemical models (MIRIAM).
Le Novère N, Finney A, Hucka M, Bhalla US, Campagne F, Collado-Vides J, Crampin EJ, Halstead M, Klipp E, Mendes P, Nielsen P, Sauro H, Shapiro B, Snoep JL, Spence HD, Wanner BL. Le Novère N, et al. Nat Biotechnol. 2005 Dec;23(12):1509-15. doi: 10.1038/nbt1156. Nat Biotechnol. 2005. PMID: 16333295
Supporting the SBML layout extension.
Deckard A, Bergmann FT, Sauro HM. Deckard A, et al. Among authors: sauro hm. Bioinformatics. 2006 Dec 1;22(23):2966-7. doi: 10.1093/bioinformatics/btl520. Epub 2006 Oct 11. Bioinformatics. 2006. PMID: 17038346
Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR, Sauro HM. Vallabhajosyula RR, et al. Among authors: sauro hm. Bioinformatics. 2007 Jul 15;23(14):1859-61. doi: 10.1093/bioinformatics/btm231. Epub 2007 Jun 22. Bioinformatics. 2007. PMID: 17586553
134 results