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Critical assessment of automated flow cytometry data analysis techniques.
Aghaeepour N, Finak G; FlowCAP Consortium; DREAM Consortium; Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Aghaeepour N, et al. Among authors: scheuermann rh. Nat Methods. 2013 Mar;10(3):228-38. doi: 10.1038/nmeth.2365. Epub 2013 Feb 10. Nat Methods. 2013. PMID: 23396282 Free PMC article.
MIFlowCyt: the minimum information about a Flow Cytometry Experiment.
Lee JA, Spidlen J, Boyce K, Cai J, Crosbie N, Dalphin M, Furlong J, Gasparetto M, Goldberg M, Goralczyk EM, Hyun B, Jansen K, Kollmann T, Kong M, Leif R, McWeeney S, Moloshok TD, Moore W, Nolan G, Nolan J, Nikolich-Zugich J, Parrish D, Purcell B, Qian Y, Selvaraj B, Smith C, Tchuvatkina O, Wertheimer A, Wilkinson P, Wilson C, Wood J, Zigon R; International Society for Advancement of Cytometry Data Standards Task Force; Scheuermann RH, Brinkman RR. Lee JA, et al. Among authors: scheuermann rh. Cytometry A. 2008 Oct;73(10):926-30. doi: 10.1002/cyto.a.20623. Cytometry A. 2008. PMID: 18752282 Free PMC article.
FuGEFlow: data model and markup language for flow cytometry.
Qian Y, Tchuvatkina O, Spidlen J, Wilkinson P, Gasparetto M, Jones AR, Manion FJ, Scheuermann RH, Sekaly RP, Brinkman RR. Qian Y, et al. Among authors: scheuermann rh. BMC Bioinformatics. 2009 Jun 16;10:184. doi: 10.1186/1471-2105-10-184. BMC Bioinformatics. 2009. PMID: 19531228 Free PMC article.
Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data.
Qian Y, Wei C, Eun-Hyung Lee F, Campbell J, Halliley J, Lee JA, Cai J, Kong YM, Sadat E, Thomson E, Dunn P, Seegmiller AC, Karandikar NJ, Tipton CM, Mosmann T, Sanz I, Scheuermann RH. Qian Y, et al. Among authors: scheuermann rh. Cytometry B Clin Cytom. 2010;78 Suppl 1(Suppl 1):S69-82. doi: 10.1002/cyto.b.20554. Cytometry B Clin Cytom. 2010. PMID: 20839340 Free PMC article.
GenePattern flow cytometry suite.
Spidlen J, Barsky A, Breuer K, Carr P, Nazaire MD, Hill BA, Qian Y, Liefeld T, Reich M, Mesirov JP, Wilkinson P, Scheuermann RH, Sekaly RP, Brinkman RR. Spidlen J, et al. Among authors: scheuermann rh. Source Code Biol Med. 2013 Jul 3;8(1):14. doi: 10.1186/1751-0473-8-14. Source Code Biol Med. 2013. PMID: 23822732 Free PMC article.
flowCL: ontology-based cell population labelling in flow cytometry.
Courtot M, Meskas J, Diehl AD, Droumeva R, Gottardo R, Jalali A, Taghiyar MJ, Maecker HT, McCoy JP, Ruttenberg A, Scheuermann RH, Brinkman RR. Courtot M, et al. Among authors: scheuermann rh. Bioinformatics. 2015 Apr 15;31(8):1337-9. doi: 10.1093/bioinformatics/btu807. Epub 2014 Dec 6. Bioinformatics. 2015. PMID: 25481008 Free PMC article.
Thinking outside the gate: single-cell assessments in multiple dimensions.
Kvistborg P, Gouttefangeas C, Aghaeepour N, Cazaly A, Chattopadhyay PK, Chan C, Eckl J, Finak G, Hadrup SR, Maecker HT, Maurer D, Mosmann T, Qiu P, Scheuermann RH, Welters MJ, Ferrari G, Brinkman RR, Britten CM. Kvistborg P, et al. Among authors: scheuermann rh. Immunity. 2015 Apr 21;42(4):591-2. doi: 10.1016/j.immuni.2015.04.006. Immunity. 2015. PMID: 25902473 Free PMC article. No abstract available.
State-of-the-Art in the Computational Analysis of Cytometry Data.
Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH. Brinkman RR, et al. Among authors: scheuermann rh. Cytometry A. 2015 Jul;87(7):591-3. doi: 10.1002/cyto.a.22707. Cytometry A. 2015. PMID: 26111230 Free article. No abstract available.
203 results