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A Bayesian method for analyzing lateral gene transfer.
Sjöstrand J, Tofigh A, Daubin V, Arvestad L, Sennblad B, Lagergren J. Sjöstrand J, et al. Among authors: sennblad b. Syst Biol. 2014 May;63(3):409-20. doi: 10.1093/sysbio/syu007. Epub 2014 Feb 20. Syst Biol. 2014. PMID: 24562812
primetv: a viewer for reconciled trees.
Sennblad B, Schreil E, Berglund Sonnhammer AC, Lagergren J, Arvestad L. Sennblad B, et al. BMC Bioinformatics. 2007 May 7;8:148. doi: 10.1186/1471-2105-8-148. BMC Bioinformatics. 2007. PMID: 17484781 Free PMC article.
Birth-death prior on phylogeny and speed dating.
Akerborg O, Sennblad B, Lagergren J. Akerborg O, et al. Among authors: sennblad b. BMC Evol Biol. 2008 Mar 4;8:77. doi: 10.1186/1471-2148-8-77. BMC Evol Biol. 2008. PMID: 18318893 Free PMC article.
Probabilistic orthology analysis.
Sennblad B, Lagergren J. Sennblad B, et al. Syst Biol. 2009 Aug;58(4):411-24. doi: 10.1093/sysbio/syp046. Epub 2009 Aug 18. Syst Biol. 2009. PMID: 20525594
Combined chromatin and expression analysis reveals specific regulatory mechanisms within cytokine genes in the macrophage early immune response.
Iglesias MJ, Reilly SJ, Emanuelsson O, Sennblad B, Pirmoradian Najafabadi M, Folkersen L, Mälarstig A, Lagergren J, Eriksson P, Hamsten A, Odeberg J. Iglesias MJ, et al. Among authors: sennblad b. PLoS One. 2012;7(2):e32306. doi: 10.1371/journal.pone.0032306. Epub 2012 Feb 27. PLoS One. 2012. PMID: 22384210 Free PMC article.
DLRS: gene tree evolution in light of a species tree.
Sjöstrand J, Sennblad B, Arvestad L, Lagergren J. Sjöstrand J, et al. Among authors: sennblad b. Bioinformatics. 2012 Nov 15;28(22):2994-5. doi: 10.1093/bioinformatics/bts548. Epub 2012 Sep 14. Bioinformatics. 2012. PMID: 22982573
GenPhyloData: realistic simulation of gene family evolution.
Sjöstrand J, Arvestad L, Lagergren J, Sennblad B. Sjöstrand J, et al. Among authors: sennblad b. BMC Bioinformatics. 2013 Jun 27;14:209. doi: 10.1186/1471-2105-14-209. BMC Bioinformatics. 2013. PMID: 23803001 Free PMC article.
75 results