Seringhaus MR - Search Results

1

Publishing perishing? Towards tomorrow's information architecture.

Seringhaus MR, Gerstein MB. Seringhaus MR, et al. BMC Bioinformatics. 2007 Jan 19;8:17. doi: 10.1186/1471-2105-8-17. BMC Bioinformatics. 2007. PMID: 17239245 Free PMC article.

2

Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms.

Borneman AR, Zhang ZD, Rozowsky J, Seringhaus MR, Gerstein M, Snyder M. Borneman AR, et al. Among authors: seringhaus mr. Funct Integr Genomics. 2007 Oct;7(4):335-45. doi: 10.1007/s10142-007-0054-7. Epub 2007 Jul 19. Funct Integr Genomics. 2007. PMID: 17638031

3

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M. Borneman AR, et al. Among authors: seringhaus mr. Science. 2007 Aug 10;317(5839):815-9. doi: 10.1126/science.1140748. Science. 2007. PMID: 17690298

4

Uncovering trends in gene naming.

Seringhaus MR, Cayting PD, Gerstein MB. Seringhaus MR, et al. Genome Biol. 2008 Jan 31;9(1):401. doi: 10.1186/gb-2008-9-1-401. Genome Biol. 2008. PMID: 18254929 Free PMC article.

5

Genomic analysis of insertion behavior and target specificity of mini-Tn7 and Tn3 transposons in Saccharomyces cerevisiae.

Seringhaus M, Kumar A, Hartigan J, Snyder M, Gerstein M. Seringhaus M, et al. Nucleic Acids Res. 2006 Apr 28;34(8):e57. doi: 10.1093/nar/gkl184. Nucleic Acids Res. 2006. PMID: 16648358 Free PMC article.

6

Predicting essential genes in fungal genomes.

Seringhaus M, Paccanaro A, Borneman A, Snyder M, Gerstein M. Seringhaus M, et al. Genome Res. 2006 Sep;16(9):1126-35. doi: 10.1101/gr.5144106. Epub 2006 Aug 9. Genome Res. 2006. PMID: 16899653 Free PMC article.

7

Seeking a new biology through text mining.

Rzhetsky A, Seringhaus M, Gerstein M. Rzhetsky A, et al. Cell. 2008 Jul 11;134(1):9-13. doi: 10.1016/j.cell.2008.06.029. Cell. 2008. PMID: 18614002 Free PMC article.

8

Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays.

Seringhaus M, Rozowsky J, Royce T, Nagalakshmi U, Jee J, Snyder M, Gerstein M. Seringhaus M, et al. BMC Genomics. 2008 Dec 31;9:635. doi: 10.1186/1471-2164-9-635. BMC Genomics. 2008. PMID: 19117516 Free PMC article.

9

Analyzing cellular biochemistry in terms of molecular networks.

Xia Y, Yu H, Jansen R, Seringhaus M, Baxter S, Greenbaum D, Zhao H, Gerstein M. Xia Y, et al. Annu Rev Biochem. 2004;73:1051-87. doi: 10.1146/annurev.biochem.73.011303.073950. Annu Rev Biochem. 2004. PMID: 15189167 Review.

10

Large-scale mutagenesis of the yeast genome using a Tn7-derived multipurpose transposon.

Kumar A, Seringhaus M, Biery MC, Sarnovsky RJ, Umansky L, Piccirillo S, Heidtman M, Cheung KH, Dobry CJ, Gerstein MB, Craig NL, Snyder M. Kumar A, et al. Genome Res. 2004 Oct;14(10A):1975-86. doi: 10.1101/gr.2875304. Genome Res. 2004. PMID: 15466296 Free PMC article.

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