Shannon P - Search Results

1

Orchestrating high-throughput genomic analysis with Bioconductor.

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: shannon p. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.

2

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.

Obenchain V, Lawrence M, Carey V, Gogarten S, Shannon P, Morgan M. Obenchain V, et al. Among authors: shannon p. Bioinformatics. 2014 Jul 15;30(14):2076-8. doi: 10.1093/bioinformatics/btu168. Epub 2014 Mar 28. Bioinformatics. 2014. PMID: 24681907 Free PMC article.

3

Analysis and visualization of linked molecular and clinical cancer data by using Oncoscape.

McFerrin LG, Zager M, Zhang J, Krenn G, McDermott R, Horse-Grant D, Silgard E, Colevas K, Shannon P, Bolouri H, Holland EC. McFerrin LG, et al. Among authors: shannon p. Nat Genet. 2018 Sep;50(9):1203-1204. doi: 10.1038/s41588-018-0208-7. Nat Genet. 2018. PMID: 30158685 No abstract available.

4

Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Shannon P, et al. Genome Res. 2003 Nov;13(11):2498-504. doi: 10.1101/gr.1239303. Genome Res. 2003. PMID: 14597658 Free PMC article.

5

Exome sequencing identifies the cause of a mendelian disorder.

Ng SB, Buckingham KJ, Lee C, Bigham AW, Tabor HK, Dent KM, Huff CD, Shannon PT, Jabs EW, Nickerson DA, Shendure J, Bamshad MJ. Ng SB, et al. Nat Genet. 2010 Jan;42(1):30-5. doi: 10.1038/ng.499. Epub 2009 Nov 13. Nat Genet. 2010. PMID: 19915526 Free PMC article.

6

RCytoscape: tools for exploratory network analysis.

Shannon PT, Grimes M, Kutlu B, Bot JJ, Galas DJ. Shannon PT, et al. BMC Bioinformatics. 2013 Jul 9;14:217. doi: 10.1186/1471-2105-14-217. BMC Bioinformatics. 2013. PMID: 23837656 Free PMC article.

7

Creation and maintenance of Helix, a Web based database of medical genetics laboratories, to serve the needs of the genetics community.

Tarczy-Hornoch P, Covington ML, Edwards J, Shannon P, Fuller S, Pagon RA. Tarczy-Hornoch P, et al. Among authors: shannon p. Proc AMIA Symp. 1998:341-5. Proc AMIA Symp. 1998. PMID: 9929238 Free PMC article.

8

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS. Shannon PT, et al. BMC Bioinformatics. 2006 Mar 28;7:176. doi: 10.1186/1471-2105-7-176. BMC Bioinformatics. 2006. PMID: 16569235 Free PMC article.

9

GeneClinics: a hybrid text/data electronic publishing model using XML applied to clinical genetic testing.

Tarczy-Hornoch P, Shannon P, Baskin P, Espeseth M, Pagon RA. Tarczy-Hornoch P, et al. Among authors: shannon p. J Am Med Inform Assoc. 2000 May-Jun;7(3):267-76. doi: 10.1136/jamia.2000.0070267. J Am Med Inform Assoc. 2000. PMID: 10833163 Free PMC article.

10

The Protein Information and Property Explorer 2: gaggle-like exploration of biological proteomic data within one webpage.

Ramos H, Shannon P, Brusniak MY, Kusebauch U, Moritz RL, Aebersold R. Ramos H, et al. Among authors: shannon p. Proteomics. 2011 Jan;11(1):154-8. doi: 10.1002/pmic.201000459. Epub 2010 Dec 6. Proteomics. 2011. PMID: 21182202 Free PMC article.

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