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Text mining for biology--the way forward: opinions from leading scientists.
Altman RB, Bergman CM, Blake J, Blaschke C, Cohen A, Gannon F, Grivell L, Hahn U, Hersh W, Hirschman L, Jensen LJ, Krallinger M, Mons B, O'Donoghue SI, Peitsch MC, Rebholz-Schuhmann D, Shatkay H, Valencia A. Altman RB, et al. Among authors: shatkay h. Genome Biol. 2008;9 Suppl 2(Suppl 2):S7. doi: 10.1186/gb-2008-9-s2-s7. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834498 Free PMC article.
Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.
Verspoor K, Shatkay H, Hirschman L, Blaschke C, Valencia A. Verspoor K, et al. Among authors: shatkay h. Bioinformatics. 2015 Jan 15;31(2):297-8. doi: 10.1093/bioinformatics/btu412. Epub 2014 Jul 14. Bioinformatics. 2015. PMID: 25024289
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. Krallinger M, et al. Among authors: shatkay h. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-12-S8-S3. BMC Bioinformatics. 2011. PMID: 22151929 Free PMC article.
Compound image segmentation of published biomedical figures.
Li P, Jiang X, Kambhamettu C, Shatkay H. Li P, et al. Among authors: shatkay h. Bioinformatics. 2018 Apr 1;34(7):1192-1199. doi: 10.1093/bioinformatics/btx611. Bioinformatics. 2018. PMID: 29040394 Free PMC article.
Figure and caption extraction from biomedical documents.
Li P, Jiang X, Shatkay H. Li P, et al. Among authors: shatkay h. Bioinformatics. 2019 Nov 1;35(21):4381-4388. doi: 10.1093/bioinformatics/btz228. Bioinformatics. 2019. PMID: 30949681 Free PMC article.
55 results