Shooshtari P - Search Results

1

Spidlen J, Shooshtari P, Kollmann TR, Brinkman RR. Spidlen J, et al. Among authors: shooshtari p. BMC Res Notes. 2011 Mar 7;4:50. doi: 10.1186/1756-0500-4-50. BMC Res Notes. 2011. PMID: 21385382 Free PMC article.

2

Data reduction for spectral clustering to analyze high throughput flow cytometry data.

Zare H, Shooshtari P, Gupta A, Brinkman RR. Zare H, et al. Among authors: shooshtari p. BMC Bioinformatics. 2010 Jul 28;11:403. doi: 10.1186/1471-2105-11-403. BMC Bioinformatics. 2010. PMID: 20667133 Free PMC article.

3

Critical assessment of automated flow cytometry data analysis techniques.

Aghaeepour N, Finak G; FlowCAP Consortium; DREAM Consortium; Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Aghaeepour N, et al. Nat Methods. 2013 Mar;10(3):228-38. doi: 10.1038/nmeth.2365. Epub 2013 Feb 10. Nat Methods. 2013. PMID: 23396282 Free PMC article.

4

Correlation analysis of intracellular and secreted cytokines via the generalized integrated mean fluorescence intensity.

Shooshtari P, Fortuno ES 3rd, Blimkie D, Yu M, Gupta A, Kollmann TR, Brinkman RR. Shooshtari P, et al. Cytometry A. 2010 Sep;77(9):873-80. doi: 10.1002/cyto.a.20943. Cytometry A. 2010. PMID: 20629196 Free PMC article.

5

CReSCENT: CanceR Single Cell ExpressioN Toolkit.

Mohanraj S, Díaz-Mejía JJ, Pham MD, Elrick H, Husić M, Rashid S, Luo P, Bal P, Lu K, Patel S, Mahalanabis A, Naidas A, Christensen E, Croucher D, Richards LM, Shooshtari P, Brudno M, Ramani AK, Pugh TJ. Mohanraj S, et al. Among authors: shooshtari p. Nucleic Acids Res. 2020 Jul 2;48(W1):W372-W379. doi: 10.1093/nar/gkaa437. Nucleic Acids Res. 2020. PMID: 32479601 Free PMC article.

6

TMExplorer: A tumour microenvironment single-cell RNAseq database and search tool.

Christensen E, Naidas A, Chen D, Husic M, Shooshtari P. Christensen E, et al. Among authors: shooshtari p. PLoS One. 2022 Sep 9;17(9):e0272302. doi: 10.1371/journal.pone.0272302. eCollection 2022. PLoS One. 2022. PMID: 36084081 Free PMC article.

7

Leveraging Public Single-Cell and Bulk Transcriptomic Datasets to Delineate MAIT Cell Roles and Phenotypic Characteristics in Human Malignancies.

Yao T, Shooshtari P, Haeryfar SMM. Yao T, et al. Among authors: shooshtari p. Front Immunol. 2020 Jul 31;11:1691. doi: 10.3389/fimmu.2020.01691. eCollection 2020. Front Immunol. 2020. PMID: 32849590 Free PMC article.

8

Single-Cell Chromatin Accessibility Data Combined with GWAS Improves Detection of Relevant Cell Types in 59 Complex Phenotypes.

Das AC, Foroutan A, Qian B, Hosseini Naghavi N, Shabani K, Shooshtari P. Das AC, et al. Among authors: shooshtari p. Int J Mol Sci. 2022 Sep 28;23(19):11456. doi: 10.3390/ijms231911456. Int J Mol Sci. 2022. PMID: 36232752 Free PMC article.

9

Analysis of TERT Isoforms across TCGA, GTEx and CCLE Datasets.

Subasri M, Shooshtari P, Watson AJ, Betts DH. Subasri M, et al. Among authors: shooshtari p. Cancers (Basel). 2021 Apr 13;13(8):1853. doi: 10.3390/cancers13081853. Cancers (Basel). 2021. PMID: 33924498 Free PMC article.

10

Developing OCHROdb, a comprehensive quality checked database of open chromatin regions from sequencing data.

Shooshtari P, Feng S, Nelakuditi V, Asakereh R, Hosseini Naghavi N, Foong J, Brudno M, Cotsapas C. Shooshtari P, et al. Sci Rep. 2023 May 18;13(1):8106. doi: 10.1038/s41598-022-26791-x. Sci Rep. 2023. PMID: 37202401 Free PMC article.

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