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The genus burkholderia: analysis of 56 genomic sequences.
Ussery DW, Kiil K, Lagesen K, Sicheritz-Pontén T, Bohlin J, Wassenaar TM. Ussery DW, et al. Genome Dyn. 2009;6:140-157. doi: 10.1159/000235768. Epub 2009 Aug 19. Genome Dyn. 2009. PMID: 19696499
Genome update: sigma factors in 240 bacterial genomes.
Kill K, Binnewies TT, Sicheritz-Pontén T, Willenbrock H, Hallin PF, Wassenaar TM, Ussery DW. Kill K, et al. Microbiology (Reading). 2005 Oct;151(Pt 10):3147-3150. doi: 10.1099/mic.0.28339-0. Microbiology (Reading). 2005. PMID: 16207898 Free article. No abstract available.
Benchmarking of methods for genomic taxonomy.
Larsen MV, Cosentino S, Lukjancenko O, Saputra D, Rasmussen S, Hasman H, Sicheritz-Pontén T, Aarestrup FM, Ussery DW, Lund O. Larsen MV, et al. J Clin Microbiol. 2014 May;52(5):1529-39. doi: 10.1128/JCM.02981-13. Epub 2014 Feb 26. J Clin Microbiol. 2014. PMID: 24574292 Free PMC article.
Global features of the Alcanivorax borkumensis SK2 genome.
Reva ON, Hallin PF, Willenbrock H, Sicheritz-Ponten T, Tümmler B, Ussery DW. Reva ON, et al. Environ Microbiol. 2008 Mar;10(3):614-25. doi: 10.1111/j.1462-2920.2007.01483.x. Epub 2007 Dec 12. Environ Microbiol. 2008. PMID: 18081853
Genome update: prediction of secreted proteins in 225 bacterial proteomes.
Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pontén T, Ussery DW. Bendtsen JD, et al. Microbiology (Reading). 2005 Jun;151(Pt 6):1725-1727. doi: 10.1099/mic.0.28029-0. Microbiology (Reading). 2005. PMID: 15941981 Free article. Review. No abstract available.
Multilocus sequence typing of total-genome-sequenced bacteria.
Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Pontén T, Ussery DW, Aarestrup FM, Lund O. Larsen MV, et al. J Clin Microbiol. 2012 Apr;50(4):1355-61. doi: 10.1128/JCM.06094-11. Epub 2012 Jan 11. J Clin Microbiol. 2012. PMID: 22238442 Free PMC article.
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium; Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; MetaHIT Consortium. Nielsen HB, et al. Nat Biotechnol. 2014 Aug;32(8):822-8. doi: 10.1038/nbt.2939. Epub 2014 Jul 6. Nat Biotechnol. 2014. PMID: 24997787
138 results