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A community-driven global reconstruction of human metabolism.
Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bölling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novère N, Malys N, Mazein A, Papin JA, Price ND, Selkov E Sr, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BØ. Thiele I, et al. Among authors: simeonidis e. Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3. Nat Biotechnol. 2013. PMID: 23455439 Free PMC article.
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.
Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Blüthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novère N, Li P, Liebermeister W, Mo ML, Oliveira AP, Petranovic D, Pettifer S, Simeonidis E, Smallbone K, Spasić I, Weichart D, Brent R, Broomhead DS, Westerhoff HV, Kirdar B, Penttilä M, Klipp E, Palsson BØ, Sauer U, Oliver SG, Mendes P, Nielsen J, Kell DB. Herrgård MJ, et al. Among authors: simeonidis e. Nat Biotechnol. 2008 Oct;26(10):1155-60. doi: 10.1038/nbt1492. Nat Biotechnol. 2008. PMID: 18846089 Free PMC article.
Flux balance analysis: a geometric perspective.
Smallbone K, Simeonidis E. Smallbone K, et al. Among authors: simeonidis e. J Theor Biol. 2009 May 21;258(2):311-5. doi: 10.1016/j.jtbi.2009.01.027. Epub 2009 Feb 7. J Theor Biol. 2009. PMID: 19490860
Towards a genome-scale kinetic model of cellular metabolism.
Smallbone K, Simeonidis E, Swainston N, Mendes P. Smallbone K, et al. Among authors: simeonidis e. BMC Syst Biol. 2010 Jan 28;4:6. doi: 10.1186/1752-0509-4-6. BMC Syst Biol. 2010. PMID: 20109182 Free PMC article.
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.
Smallbone K, Messiha HL, Carroll KM, Winder CL, Malys N, Dunn WB, Murabito E, Swainston N, Dada JO, Khan F, Pir P, Simeonidis E, Spasić I, Wishart J, Weichart D, Hayes NW, Jameson D, Broomhead DS, Oliver SG, Gaskell SJ, McCarthy JE, Paton NW, Westerhoff HV, Kell DB, Mendes P. Smallbone K, et al. Among authors: simeonidis e. FEBS Lett. 2013 Sep 2;587(17):2832-41. doi: 10.1016/j.febslet.2013.06.043. Epub 2013 Jul 4. FEBS Lett. 2013. PMID: 23831062 Free PMC article.
Genome-scale modeling for metabolic engineering.
Simeonidis E, Price ND. Simeonidis E, et al. J Ind Microbiol Biotechnol. 2015 Mar;42(3):327-38. doi: 10.1007/s10295-014-1576-3. Epub 2015 Jan 13. J Ind Microbiol Biotechnol. 2015. PMID: 25578304 Free PMC article. Review.
Computing life: Add logos to biology and bios to physics.
Kolodkin A, Simeonidis E, Westerhoff HV. Kolodkin A, et al. Among authors: simeonidis e. Prog Biophys Mol Biol. 2013 Apr;111(2-3):69-74. doi: 10.1016/j.pbiomolbio.2012.10.003. Epub 2012 Oct 24. Prog Biophys Mol Biol. 2013. PMID: 23103359
29 results