Skums P - Search Results

1

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.

Skums P, Zelikovsky A, Singh R, Gussler W, Dimitrova Z, Knyazev S, Mandric I, Ramachandran S, Campo D, Jha D, Bunimovich L, Costenbader E, Sexton C, O'Connor S, Xia GL, Khudyakov Y. Skums P, et al. Bioinformatics. 2018 Jan 1;34(1):163-170. doi: 10.1093/bioinformatics/btx402. Bioinformatics. 2018. PMID: 29304222 Free PMC article.

2

Efficient error correction for next-generation sequencing of viral amplicons.

Skums P, Dimitrova Z, Campo DS, Vaughan G, Rossi L, Forbi JC, Yokosawa J, Zelikovsky A, Khudyakov Y. Skums P, et al. BMC Bioinformatics. 2012 Jun 25;13 Suppl 10(Suppl 10):S6. doi: 10.1186/1471-2105-13-S10-S6. BMC Bioinformatics. 2012. PMID: 22759430 Free PMC article.

3

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry.

Dimitrova Z, Campo DS, Ramachandran S, Vaughan G, Ganova-Raeva L, Lin Y, Forbi JC, Xia G, Skums P, Pearlman B, Khudyakov Y. Dimitrova Z, et al. Among authors: skums p. In Silico Biol. 2011-2012;11(5-6):183-92. doi: 10.3233/ISB-2012-0453. In Silico Biol. 2011. PMID: 23202420

4

Reconstructing viral quasispecies from NGS amplicon reads.

Mancuso N, Tork B, Skums P, Ganova-Raeva L, Măndoiu I, Zelikovsky A. Mancuso N, et al. Among authors: skums p. In Silico Biol. 2011-2012;11(5-6):237-49. doi: 10.3233/ISB-2012-0458. In Silico Biol. 2011. PMID: 23202425

5

Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response.

Skums P, Campo DS, Dimitrova Z, Vaughan G, Lau DT, Khudyakov Y. Skums P, et al. In Silico Biol. 2011-2012;11(5-6):263-9. doi: 10.3233/ISB-2012-0460. In Silico Biol. 2011. PMID: 23202427

6

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.

Skums P, Mancuso N, Artyomenko A, Tork B, Mandoiu I, Khudyakov Y, Zelikovsky A. Skums P, et al. BMC Bioinformatics. 2013;14 Suppl 9(Suppl 9):S2. doi: 10.1186/1471-2105-14-S9-S2. Epub 2013 Jun 28. BMC Bioinformatics. 2013. PMID: 23902469 Free PMC article.

7

Drug resistance of a viral population and its individual intrahost variants during the first 48 hours of therapy.

Campo DS, Skums P, Dimitrova Z, Vaughan G, Forbi JC, Teo CG, Khudyakov Y, Lau DT. Campo DS, et al. Among authors: skums p. Clin Pharmacol Ther. 2014 Jun;95(6):627-35. doi: 10.1038/clpt.2014.20. Epub 2014 Jan 31. Clin Pharmacol Ther. 2014. PMID: 24488144 Free PMC article.

8

Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.

Forbi JC, Campo DS, Purdy MA, Dimitrova ZE, Skums P, Xia GL, Punkova LT, Ganova-Raeva LM, Vaughan G, Ben-Ayed Y, Switzer WM, Khudyakov YE. Forbi JC, et al. Among authors: skums p. J Med Virol. 2014 May;86(5):765-71. doi: 10.1002/jmv.23897. Epub 2014 Feb 12. J Med Virol. 2014. PMID: 24519518 Free PMC article.

9

Next-generation sequencing reveals large connected networks of intra-host HCV variants.

Campo DS, Dimitrova Z, Yamasaki L, Skums P, Lau DT, Vaughan G, Forbi JC, Teo CG, Khudyakov Y. Campo DS, et al. Among authors: skums p. BMC Genomics. 2014;15 Suppl 5(Suppl 5):S4. doi: 10.1186/1471-2164-15-S5-S4. Epub 2014 Jul 14. BMC Genomics. 2014. PMID: 25081811 Free PMC article.

10

Analysis of the evolution and structure of a complex intrahost viral population in chronic hepatitis C virus mapped by ultradeep pyrosequencing.

Palmer BA, Dimitrova Z, Skums P, Crosbie O, Kenny-Walsh E, Fanning LJ. Palmer BA, et al. Among authors: skums p. J Virol. 2014 Dec;88(23):13709-21. doi: 10.1128/JVI.01732-14. Epub 2014 Sep 17. J Virol. 2014. PMID: 25231312 Free PMC article.

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