Snyder M - Search Results

1

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.

Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, Weng Z. Wang J, et al. Among authors: snyder m. Genome Res. 2012 Sep;22(9):1798-812. doi: 10.1101/gr.139105.112. Genome Res. 2012. PMID: 22955990 Free PMC article.

2

Predicting essential genes in fungal genomes.

Seringhaus M, Paccanaro A, Borneman A, Snyder M, Gerstein M. Seringhaus M, et al. Among authors: snyder m. Genome Res. 2006 Sep;16(9):1126-35. doi: 10.1101/gr.5144106. Epub 2006 Aug 9. Genome Res. 2006. PMID: 16899653 Free PMC article.

3

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.

Emanuelsson O, Nagalakshmi U, Zheng D, Rozowsky JS, Urban AE, Du J, Lian Z, Stolc V, Weissman S, Snyder M, Gerstein MB. Emanuelsson O, et al. Among authors: snyder m. Genome Res. 2007 Jun;17(6):886-97. doi: 10.1101/gr.5014606. Epub 2006 Nov 21. Genome Res. 2007. PMID: 17119069 Free PMC article.

4

What is a gene, post-ENCODE? History and updated definition.

Gerstein MB, Bruce C, Rozowsky JS, Zheng D, Du J, Korbel JO, Emanuelsson O, Zhang ZD, Weissman S, Snyder M. Gerstein MB, et al. Among authors: snyder m. Genome Res. 2007 Jun;17(6):669-81. doi: 10.1101/gr.6339607. Genome Res. 2007. PMID: 17567988 Free article. Review.

5

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome.

Trinklein ND, Karaöz U, Wu J, Halees A, Force Aldred S, Collins PJ, Zheng D, Zhang ZD, Gerstein MB, Snyder M, Myers RM, Weng Z. Trinklein ND, et al. Among authors: snyder m. Genome Res. 2007 Jun;17(6):720-31. doi: 10.1101/gr.5716607. Genome Res. 2007. PMID: 17567992 Free PMC article.

6

The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci.

Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB. Rozowsky JS, et al. Among authors: snyder m. Genome Res. 2007 Jun;17(6):732-45. doi: 10.1101/gr.5696007. Genome Res. 2007. PMID: 17567993 Free PMC article.

7

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.

Zhang ZD, Paccanaro A, Fu Y, Weissman S, Weng Z, Chang J, Snyder M, Gerstein MB. Zhang ZD, et al. Among authors: snyder m. Genome Res. 2007 Jun;17(6):787-97. doi: 10.1101/gr.5573107. Genome Res. 2007. PMID: 17567997 Free PMC article.

8

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.

Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu Y, Denoeud F, Antonarakis SE, Snyder M, Ruan Y, Wei CL, Gingeras TR, Guigó R, Harrow J, Gerstein MB. Zheng D, et al. Among authors: snyder m. Genome Res. 2007 Jun;17(6):839-51. doi: 10.1101/gr.5586307. Genome Res. 2007. PMID: 17568002 Free PMC article.

9

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies.

Euskirchen GM, Rozowsky JS, Wei CL, Lee WH, Zhang ZD, Hartman S, Emanuelsson O, Stolc V, Weissman S, Gerstein MB, Ruan Y, Snyder M. Euskirchen GM, et al. Among authors: snyder m. Genome Res. 2007 Jun;17(6):898-909. doi: 10.1101/gr.5583007. Genome Res. 2007. PMID: 17568005 Free PMC article.

10

Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).

Bhinge AA, Kim J, Euskirchen GM, Snyder M, Iyer VR. Bhinge AA, et al. Among authors: snyder m. Genome Res. 2007 Jun;17(6):910-6. doi: 10.1101/gr.5574907. Genome Res. 2007. PMID: 17568006 Free PMC article.

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