Staaf J - Search Results

1

Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration.

Smid M, Rodríguez-González FG, Sieuwerts AM, Salgado R, Prager-Van der Smissen WJ, Vlugt-Daane MV, van Galen A, Nik-Zainal S, Staaf J, Brinkman AB, van de Vijver MJ, Richardson AL, Fatima A, Berentsen K, Butler A, Martin S, Davies HR, Debets R, Gelder ME, van Deurzen CH, MacGrogan G, Van den Eynden GG, Purdie C, Thompson AM, Caldas C, Span PN, Simpson PT, Lakhani SR, Van Laere S, Desmedt C, Ringnér M, Tommasi S, Eyford J, Broeks A, Vincent-Salomon A, Futreal PA, Knappskog S, King T, Thomas G, Viari A, Langerød A, Børresen-Dale AL, Birney E, Stunnenberg HG, Stratton M, Foekens JA, Martens JW. Smid M, et al. Among authors: staaf j. Nat Commun. 2016 Sep 26;7:12910. doi: 10.1038/ncomms12910. Nat Commun. 2016. PMID: 27666519 Free PMC article.

2

ACID: a database for microarray clone information.

Ringnér M, Veerla S, Andersson S, Staaf J, Häkkinen J. Ringnér M, et al. Among authors: staaf j. Bioinformatics. 2004 Sep 22;20(14):2305-6. doi: 10.1093/bioinformatics/bth089. Epub 2004 Feb 12. Bioinformatics. 2004. PMID: 14962935

3

Distinct genomic profiles in hereditary breast tumors identified by array-based comparative genomic hybridization.

Jönsson G, Naylor TL, Vallon-Christersson J, Staaf J, Huang J, Ward MR, Greshock JD, Luts L, Olsson H, Rahman N, Stratton M, Ringnér M, Borg A, Weber BL. Jönsson G, et al. Among authors: staaf j. Cancer Res. 2005 Sep 1;65(17):7612-21. doi: 10.1158/0008-5472.CAN-05-0570. Cancer Res. 2005. PMID: 16140926

4

Genomic profiling of malignant melanoma using tiling-resolution arrayCGH.

Jönsson G, Dahl C, Staaf J, Sandberg T, Bendahl PO, Ringnér M, Guldberg P, Borg A. Jönsson G, et al. Among authors: staaf j. Oncogene. 2007 Jul 12;26(32):4738-48. doi: 10.1038/sj.onc.1210252. Epub 2007 Jan 29. Oncogene. 2007. PMID: 17260012

5

High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization.

Jönsson G, Staaf J, Olsson E, Heidenblad M, Vallon-Christersson J, Osoegawa K, de Jong P, Oredsson S, Ringnér M, Höglund M, Borg A. Jönsson G, et al. Among authors: staaf j. Genes Chromosomes Cancer. 2007 Jun;46(6):543-58. doi: 10.1002/gcc.20438. Genes Chromosomes Cancer. 2007. PMID: 17334996

6

Normalization of array-CGH data: influence of copy number imbalances.

Staaf J, Jönsson G, Ringnér M, Vallon-Christersson J. Staaf J, et al. BMC Genomics. 2007 Oct 22;8:382. doi: 10.1186/1471-2164-8-382. BMC Genomics. 2007. PMID: 17953745 Free PMC article.

7

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.

Staaf J, Vallon-Christersson J, Lindgren D, Juliusson G, Rosenquist R, Höglund M, Borg A, Ringnér M. Staaf J, et al. BMC Bioinformatics. 2008 Oct 2;9:409. doi: 10.1186/1471-2105-9-409. BMC Bioinformatics. 2008. PMID: 18831757 Free PMC article.

8

Molecular subtypes of breast cancer are associated with characteristic DNA methylation patterns.

Holm K, Hegardt C, Staaf J, Vallon-Christersson J, Jönsson G, Olsson H, Borg A, Ringnér M. Holm K, et al. Among authors: staaf j. Breast Cancer Res. 2010;12(3):R36. doi: 10.1186/bcr2590. Epub 2010 Jun 18. Breast Cancer Res. 2010. PMID: 20565864 Free PMC article.

9

Multiple metastases from cutaneous malignant melanoma patients may display heterogeneous genomic and epigenomic patterns.

Harbst K, Staaf J, Måsbäck A, Olsson H, Ingvar C, Vallon-Christersson J, Ringnér M, Borg A, Jönsson G. Harbst K, et al. Among authors: staaf j. Melanoma Res. 2010 Oct;20(5):381-91. Melanoma Res. 2010. PMID: 20848731

10

High-resolution genomic profiling of male breast cancer reveals differences hidden behind the similarities with female breast cancer.

Johansson I, Nilsson C, Berglund P, Strand C, Jönsson G, Staaf J, Ringnér M, Nevanlinna H, Barkardottir RB, Borg A, Olsson H, Luts L, Fjällskog ML, Hedenfalk I. Johansson I, et al. Among authors: staaf j. Breast Cancer Res Treat. 2011 Oct;129(3):747-60. doi: 10.1007/s10549-010-1262-8. Epub 2010 Nov 27. Breast Cancer Res Treat. 2011. PMID: 21113657

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