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Page 1
Defining functional DNA elements in the human genome.
Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC. Kellis M, et al. Among authors: stamatoyannopoulos ja. Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Proc Natl Acad Sci U S A. 2014. PMID: 24753594 Free PMC article. Review.
Discovery of functional noncoding elements by digital analysis of chromatin structure.
Sabo PJ, Hawrylycz M, Wallace JC, Humbert R, Yu M, Shafer A, Kawamoto J, Hall R, Mack J, Dorschner MO, McArthur M, Stamatoyannopoulos JA. Sabo PJ, et al. Among authors: stamatoyannopoulos ja. Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16837-42. doi: 10.1073/pnas.0407387101. Epub 2004 Nov 18. Proc Natl Acad Sci U S A. 2004. PMID: 15550541 Free PMC article.
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
ENCODE Project Consortium; Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP… See abstract for full author list ➔ ENCODE Project Consortium, et al. Among authors: stamatoyannopoulos ja. Nature. 2007 Jun 14;447(7146):799-816. doi: 10.1038/nature05874. Nature. 2007. PMID: 17571346 Free PMC article.
Nucleosome positioning signals in genomic DNA.
Peckham HE, Thurman RE, Fu Y, Stamatoyannopoulos JA, Noble WS, Struhl K, Weng Z. Peckham HE, et al. Among authors: stamatoyannopoulos ja. Genome Res. 2007 Aug;17(8):1170-7. doi: 10.1101/gr.6101007. Epub 2007 Jul 9. Genome Res. 2007. PMID: 17620451 Free PMC article.
Widely distributed noncoding purifying selection in the human genome.
Asthana S, Noble WS, Kryukov G, Grant CE, Sunyaev S, Stamatoyannopoulos JA. Asthana S, et al. Among authors: stamatoyannopoulos ja. Proc Natl Acad Sci U S A. 2007 Jul 24;104(30):12410-5. doi: 10.1073/pnas.0705140104. Epub 2007 Jul 17. Proc Natl Acad Sci U S A. 2007. PMID: 17640883 Free PMC article.
Epigenomics at the tipping point. Foreword.
Stamatoyannopoulos JA, Dunham I. Stamatoyannopoulos JA, et al. Pharmacogenomics. 2008 Dec;9(12):1781-3. doi: 10.2217/14622416.9.12.1781. Pharmacogenomics. 2008. PMID: 19072634 Free article. No abstract available.
Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J. Lieberman-Aiden E, et al. Science. 2009 Oct 9;326(5950):289-93. doi: 10.1126/science.1181369. Science. 2009. PMID: 19815776 Free PMC article.
Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.
Hansen RS, Thomas S, Sandstrom R, Canfield TK, Thurman RE, Weaver M, Dorschner MO, Gartler SM, Stamatoyannopoulos JA. Hansen RS, et al. Among authors: stamatoyannopoulos ja. Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):139-44. doi: 10.1073/pnas.0912402107. Epub 2009 Dec 4. Proc Natl Acad Sci U S A. 2010. PMID: 19966280 Free PMC article.
The NIH Roadmap Epigenomics Mapping Consortium.
Bernstein BE, Stamatoyannopoulos JA, Costello JF, Ren B, Milosavljevic A, Meissner A, Kellis M, Marra MA, Beaudet AL, Ecker JR, Farnham PJ, Hirst M, Lander ES, Mikkelsen TS, Thomson JA. Bernstein BE, et al. Among authors: stamatoyannopoulos ja. Nat Biotechnol. 2010 Oct;28(10):1045-8. doi: 10.1038/nbt1010-1045. Nat Biotechnol. 2010. PMID: 20944595 Free PMC article.
181 results