Statham AL - Search Results

1

BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach.

Riebler A, Menigatti M, Song JZ, Statham AL, Stirzaker C, Mahmud N, Mein CA, Clark SJ, Robinson MD. Riebler A, et al. Among authors: statham al. Genome Biol. 2014 Feb 11;15(2):R35. doi: 10.1186/gb-2014-15-2-r35. Genome Biol. 2014. PMID: 24517713 Free PMC article.

2

Copy-number-aware differential analysis of quantitative DNA sequencing data.

Robinson MD, Strbenac D, Stirzaker C, Statham AL, Song J, Speed TP, Clark SJ. Robinson MD, et al. Among authors: statham al. Genome Res. 2012 Dec;22(12):2489-96. doi: 10.1101/gr.139055.112. Epub 2012 Aug 9. Genome Res. 2012. PMID: 22879430 Free PMC article.

3

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

Robinson MD, Stirzaker C, Statham AL, Coolen MW, Song JZ, Nair SS, Strbenac D, Speed TP, Clark SJ. Robinson MD, et al. Among authors: statham al. Genome Res. 2010 Dec;20(12):1719-29. doi: 10.1101/gr.110601.110. Epub 2010 Nov 2. Genome Res. 2010. PMID: 21045081 Free PMC article.

4

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.

Statham AL, Robinson MD, Song JZ, Coolen MW, Stirzaker C, Clark SJ. Statham AL, et al. Genome Res. 2012 Jun;22(6):1120-7. doi: 10.1101/gr.132076.111. Epub 2012 Mar 30. Genome Res. 2012. PMID: 22466171 Free PMC article.

5

Bisulphite Sequencing of Chromatin Immunoprecipitated DNA (BisChIP-seq).

Stirzaker C, Song JZ, Statham AL, Clark SJ. Stirzaker C, et al. Among authors: statham al. Methods Mol Biol. 2018;1708:285-302. doi: 10.1007/978-1-4939-7481-8_15. Methods Mol Biol. 2018. PMID: 29224150

6

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias.

Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ. Nair SS, et al. Among authors: statham al. Epigenetics. 2011 Jan;6(1):34-44. doi: 10.4161/epi.6.1.13313. Epub 2011 Jan 1. Epigenetics. 2011. PMID: 20818161

7

Protocol matters: which methylome are you actually studying?

Robinson MD, Statham AL, Speed TP, Clark SJ. Robinson MD, et al. Among authors: statham al. Epigenomics. 2010 Aug;2(4):587-98. doi: 10.2217/epi.10.36. Epigenomics. 2010. PMID: 21566704 Free PMC article.

8

Mining cancer methylomes: prospects and challenges.

Stirzaker C, Taberlay PC, Statham AL, Clark SJ. Stirzaker C, et al. Among authors: statham al. Trends Genet. 2014 Feb;30(2):75-84. doi: 10.1016/j.tig.2013.11.004. Epub 2013 Dec 21. Trends Genet. 2014. PMID: 24368016 Review.

9

DNA methylation: bisulphite modification and analysis.

Clark SJ, Statham A, Stirzaker C, Molloy PL, Frommer M. Clark SJ, et al. Nat Protoc. 2006;1(5):2353-64. doi: 10.1038/nprot.2006.324. Nat Protoc. 2006. PMID: 17406479

10

Enduring epigenetic landmarks define the cancer microenvironment.

Pidsley R, Lawrence MG, Zotenko E, Niranjan B, Statham A, Song J, Chabanon RM, Qu W, Wang H, Richards M, Nair SS, Armstrong NJ, Nim HT, Papargiris M, Balanathan P, French H, Peters T, Norden S, Ryan A, Pedersen J, Kench J, Daly RJ, Horvath LG, Stricker P, Frydenberg M, Taylor RA, Stirzaker C, Risbridger GP, Clark SJ. Pidsley R, et al. Genome Res. 2018 May;28(5):625-638. doi: 10.1101/gr.229070.117. Epub 2018 Apr 12. Genome Res. 2018. PMID: 29650553 Free PMC article.

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