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Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans.
Bahl J, Nelson MI, Chan KH, Chen R, Vijaykrishna D, Halpin RA, Stockwell TB, Lin X, Wentworth DE, Ghedin E, Guan Y, Peiris JS, Riley S, Rambaut A, Holmes EC, Smith GJ. Bahl J, et al. Among authors: stockwell tb. Proc Natl Acad Sci U S A. 2011 Nov 29;108(48):19359-64. doi: 10.1073/pnas.1109314108. Epub 2011 Nov 14. Proc Natl Acad Sci U S A. 2011. PMID: 22084096 Free PMC article.
Influenza a virus migration and persistence in North American wild birds.
Bahl J, Krauss S, Kühnert D, Fourment M, Raven G, Pryor SP, Niles LJ, Danner A, Walker D, Mendenhall IH, Su YC, Dugan VG, Halpin RA, Stockwell TB, Webby RJ, Wentworth DE, Drummond AJ, Smith GJ, Webster RG. Bahl J, et al. Among authors: stockwell tb. PLoS Pathog. 2013;9(8):e1003570. doi: 10.1371/journal.ppat.1003570. Epub 2013 Aug 29. PLoS Pathog. 2013. PMID: 24009503 Free PMC article.
The contrasting phylodynamics of human influenza B viruses.
Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YC, Halpin R, Lee RT, Deng YM, Gunalan V, Lin X, Stockwell TB, Fedorova NB, Zhou B, Spirason N, Kühnert D, Bošková V, Stadler T, Costa AM, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt AC, Maurer-Stroh S, Wentworth DE, Smith GJ, Barr IG. Vijaykrishna D, et al. Among authors: stockwell tb. Elife. 2015 Jan 16;4:e05055. doi: 10.7554/eLife.05055. Elife. 2015. PMID: 25594904 Free PMC article.
Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data.
Lewis NS, Verhagen JH, Javakhishvili Z, Russell CA, Lexmond P, Westgeest KB, Bestebroer TM, Halpin RA, Lin X, Ransier A, Fedorova NB, Stockwell TB, Latorre-Margalef N, Olsen B, Smith G, Bahl J, Wentworth DE, Waldenström J, Fouchier RAM, de Graaf M. Lewis NS, et al. Among authors: stockwell tb. J Gen Virol. 2015 Aug;96(8):2050-2060. doi: 10.1099/vir.0.000155. Epub 2015 Apr 22. J Gen Virol. 2015. PMID: 25904147 Free PMC article.
Phylogeography of Influenza A(H3N2) Virus in Peru, 2010-2012.
Pollett S, Nelson MI, Kasper M, Tinoco Y, Simons M, Romero C, Silva M, Lin X, Halpin RA, Fedorova N, Stockwell TB, Wentworth D, Holmes EC, Bausch DG. Pollett S, et al. Among authors: stockwell tb. Emerg Infect Dis. 2015 Aug;21(8):1330-8. doi: 10.3201/eid2108.150084. Emerg Infect Dis. 2015. PMID: 26196599 Free PMC article.
Quantifying influenza virus diversity and transmission in humans.
Poon LL, Song T, Rosenfeld R, Lin X, Rogers MB, Zhou B, Sebra R, Halpin RA, Guan Y, Twaddle A, DePasse JV, Stockwell TB, Wentworth DE, Holmes EC, Greenbaum B, Peiris JS, Cowling BJ, Ghedin E. Poon LL, et al. Among authors: stockwell tb. Nat Genet. 2016 Feb;48(2):195-200. doi: 10.1038/ng.3479. Epub 2016 Jan 4. Nat Genet. 2016. PMID: 26727660 Free PMC article.
Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential.
Bahl J, Pham TT, Hill NJ, Hussein IT, Ma EJ, Easterday BC, Halpin RA, Stockwell TB, Wentworth DE, Kayali G, Krauss S, Schultz-Cherry S, Webster RG, Webby RJ, Swartz MD, Smith GJ, Runstadler JA. Bahl J, et al. Among authors: stockwell tb. PLoS Pathog. 2016 May 11;12(5):e1005620. doi: 10.1371/journal.ppat.1005620. eCollection 2016 May. PLoS Pathog. 2016. PMID: 27166585 Free PMC article.
Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification.
Sobel Leonard A, McClain MT, Smith GJ, Wentworth DE, Halpin RA, Lin X, Ransier A, Stockwell TB, Das SR, Gilbert AS, Lambkin-Williams R, Ginsburg GS, Woods CW, Koelle K. Sobel Leonard A, et al. Among authors: stockwell tb. J Virol. 2016 Nov 28;90(24):11247-11258. doi: 10.1128/JVI.01657-16. Print 2016 Dec 15. J Virol. 2016. PMID: 27707932 Free PMC article.
The effective rate of influenza reassortment is limited during human infection.
Sobel Leonard A, McClain MT, Smith GJ, Wentworth DE, Halpin RA, Lin X, Ransier A, Stockwell TB, Das SR, Gilbert AS, Lambkin-Williams R, Ginsburg GS, Woods CW, Koelle K, Illingworth CJ. Sobel Leonard A, et al. Among authors: stockwell tb. PLoS Pathog. 2017 Feb 7;13(2):e1006203. doi: 10.1371/journal.ppat.1006203. eCollection 2017 Feb. PLoS Pathog. 2017. PMID: 28170438 Free PMC article.
78 results