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Unique cell-type-specific patterns of DNA methylation in the root meristem.
Kawakatsu T, Stuart T, Valdes M, Breakfield N, Schmitz RJ, Nery JR, Urich MA, Han X, Lister R, Benfey PN, Ecker JR. Kawakatsu T, et al. Among authors: stuart t. Nat Plants. 2016 Apr 29;2(5):16058. doi: 10.1038/nplants.2016.58. Nat Plants. 2016. PMID: 27243651 Free PMC article.
Single nucleus multi-omics identifies human cortical cell regulatory genome diversity.
Luo C, Liu H, Xie F, Armand EJ, Siletti K, Bakken TE, Fang R, Doyle WI, Stuart T, Hodge RD, Hu L, Wang BA, Zhang Z, Preissl S, Lee DS, Zhou J, Niu SY, Castanon R, Bartlett A, Rivkin A, Wang X, Lucero J, Nery JR, Davis DA, Mash DC, Satija R, Dixon JR, Linnarsson S, Lein E, Behrens MM, Ren B, Mukamel EA, Ecker JR. Luo C, et al. Among authors: stuart t. Cell Genom. 2022 Mar 9;2(3):100107. doi: 10.1016/j.xgen.2022.100107. Cell Genom. 2022. PMID: 35419551 Free PMC article.
Integrative single-cell analysis.
Stuart T, Satija R. Stuart T, et al. Nat Rev Genet. 2019 May;20(5):257-272. doi: 10.1038/s41576-019-0093-7. Nat Rev Genet. 2019. PMID: 30696980 Review.
Single-cell chromatin state analysis with Signac.
Stuart T, Srivastava A, Madad S, Lareau CA, Satija R. Stuart T, et al. Nat Methods. 2021 Nov;18(11):1333-1341. doi: 10.1038/s41592-021-01282-5. Epub 2021 Nov 1. Nat Methods. 2021. PMID: 34725479 Free PMC article.
Comprehensive Integration of Single-Cell Data.
Stuart T, Butler A, Hoffman P, Hafemeister C, Papalexi E, Mauck WM 3rd, Hao Y, Stoeckius M, Smibert P, Satija R. Stuart T, et al. Cell. 2019 Jun 13;177(7):1888-1902.e21. doi: 10.1016/j.cell.2019.05.031. Epub 2019 Jun 6. Cell. 2019. PMID: 31178118 Free PMC article.
113 results