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The reality of pervasive transcription.
Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS. Clark MB, et al. Among authors: taft rj. PLoS Biol. 2011 Jul;9(7):e1000625; discussion e1001102. doi: 10.1371/journal.pbio.1000625. Epub 2011 Jul 12. PLoS Biol. 2011. PMID: 21765801 Free PMC article.
Non-coding RNAs: regulators of disease.
Taft RJ, Pang KC, Mercer TR, Dinger M, Mattick JS. Taft RJ, et al. J Pathol. 2010 Jan;220(2):126-39. doi: 10.1002/path.2638. J Pathol. 2010. PMID: 19882673 Review.
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
Gascoigne DK, Cheetham SW, Cattenoz PB, Clark MB, Amaral PP, Taft RJ, Wilhelm D, Dinger ME, Mattick JS. Gascoigne DK, et al. Among authors: taft rj. Bioinformatics. 2012 Dec 1;28(23):3042-50. doi: 10.1093/bioinformatics/bts582. Epub 2012 Oct 7. Bioinformatics. 2012. PMID: 23044541
Intergenic disease-associated regions are abundant in novel transcripts.
Bartonicek N, Clark MB, Quek XC, Torpy JR, Pritchard AL, Maag JLV, Gloss BS, Crawford J, Taft RJ, Hayward NK, Montgomery GW, Mattick JS, Mercer TR, Dinger ME. Bartonicek N, et al. Among authors: taft rj. Genome Biol. 2017 Dec 28;18(1):241. doi: 10.1186/s13059-017-1363-3. Genome Biol. 2017. PMID: 29284497 Free PMC article.
Molecular evolution of the HBII-52 snoRNA cluster.
Nahkuri S, Taft RJ, Korbie DJ, Mattick JS. Nahkuri S, et al. Among authors: taft rj. J Mol Biol. 2008 Sep 12;381(4):810-5. doi: 10.1016/j.jmb.2008.06.057. Epub 2008 Jun 28. J Mol Biol. 2008. PMID: 18616950
123 results