Taing L - Search Results

1

NOTCH1-RBPJ complexes drive target gene expression through dynamic interactions with superenhancers.

Wang H, Zang C, Taing L, Arnett KL, Wong YJ, Pear WS, Blacklow SC, Liu XS, Aster JC. Wang H, et al. Among authors: taing l. Proc Natl Acad Sci U S A. 2014 Jan 14;111(2):705-10. doi: 10.1073/pnas.1315023111. Epub 2013 Dec 27. Proc Natl Acad Sci U S A. 2014. PMID: 24374627 Free PMC article.

2

Cistrome: an integrative platform for transcriptional regulation studies.

Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS. Liu T, et al. Among authors: taing l. Genome Biol. 2011 Aug 22;12(8):R83. doi: 10.1186/gb-2011-12-8-r83. Genome Biol. 2011. PMID: 21859476 Free PMC article.

3

CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human.

Qin B, Zhou M, Ge Y, Taing L, Liu T, Wang Q, Wang S, Chen J, Shen L, Duan X, Hu S, Li W, Long H, Zhang Y, Liu XS. Qin B, et al. Among authors: taing l. Bioinformatics. 2012 May 15;28(10):1411-2. doi: 10.1093/bioinformatics/bts157. Epub 2012 Apr 11. Bioinformatics. 2012. PMID: 22495751 Free PMC article.

4

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.

Qin Q, Mei S, Wu Q, Sun H, Li L, Taing L, Chen S, Li F, Liu T, Zang C, Xu H, Chen Y, Meyer CA, Zhang Y, Brown M, Long HW, Liu XS. Qin Q, et al. Among authors: taing l. BMC Bioinformatics. 2016 Oct 3;17(1):404. doi: 10.1186/s12859-016-1274-4. BMC Bioinformatics. 2016. PMID: 27716038 Free PMC article.

5

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.

Mei S, Qin Q, Wu Q, Sun H, Zheng R, Zang C, Zhu M, Wu J, Shi X, Taing L, Liu T, Brown M, Meyer CA, Liu XS. Mei S, et al. Among authors: taing l. Nucleic Acids Res. 2017 Jan 4;45(D1):D658-D662. doi: 10.1093/nar/gkw983. Epub 2016 Oct 26. Nucleic Acids Res. 2017. PMID: 27789702 Free PMC article.

6

Genome-wide identification and characterization of Notch transcription complex-binding sequence-paired sites in leukemia cells.

Severson E, Arnett KL, Wang H, Zang C, Taing L, Liu H, Pear WS, Shirley Liu X, Blacklow SC, Aster JC. Severson E, et al. Among authors: taing l. Sci Signal. 2017 May 2;10(477):eaag1598. doi: 10.1126/scisignal.aag1598. Sci Signal. 2017. PMID: 28465412 Free PMC article.

7

VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.

Cornwell M, Vangala M, Taing L, Herbert Z, Köster J, Li B, Sun H, Li T, Zhang J, Qiu X, Pun M, Jeselsohn R, Brown M, Liu XS, Long HW. Cornwell M, et al. Among authors: taing l. BMC Bioinformatics. 2018 Apr 12;19(1):135. doi: 10.1186/s12859-018-2139-9. BMC Bioinformatics. 2018. PMID: 29649993 Free PMC article.

8

CistromeFinder for ChIP-seq and DNase-seq data reuse.

Sun H, Qin B, Liu T, Wang Q, Liu J, Wang J, Lin X, Yang Y, Taing L, Rao PK, Brown M, Zhang Y, Long HW, Liu XS. Sun H, et al. Among authors: taing l. Bioinformatics. 2013 May 15;29(10):1352-4. doi: 10.1093/bioinformatics/btt135. Epub 2013 Mar 18. Bioinformatics. 2013. PMID: 23508969 Free PMC article.

9

Transcriptional Regulator CNOT3 Defines an Aggressive Colorectal Cancer Subtype.

Cejas P, Cavazza A, Yandava CN, Moreno V, Horst D, Moreno-Rubio J, Burgos E, Mendiola M, Taing L, Goel A, Feliu J, Shivdasani RA. Cejas P, et al. Among authors: taing l. Cancer Res. 2017 Feb 1;77(3):766-779. doi: 10.1158/0008-5472.CAN-16-1346. Epub 2016 Nov 29. Cancer Res. 2017. PMID: 27899379 Free PMC article.

10

Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network.

Zeng Z, Fu J, Cibulskis C, Jhaveri A, Gumbs C, Das B, Sanchez-Espiridion B, Janssens S, Taing L, Wang J, Lindsay J, Vilimas T, Zhang J, Tokheim C, Sahu A, Jiang P, Yan C, Duose DY, Cerami E, Chen L, Cohen D, Chen Q, Enos R, Huang X, Lee JJ, Liu Y, Neuberg DS, Nguyen C, Patterson C, Sarkar S, Shukla S, Tang M, Tsuji J, Uduman M, Wang X, Weirather JL, Yu J, Yu J, Zhang J, Zhang J, Meerzaman D, Thurin M, Futreal A, Karlovich C, Gabriel SB, Wistuba II, Liu XS, Wu CJ. Zeng Z, et al. Among authors: taing l. Clin Cancer Res. 2021 Sep 15;27(18):5049-5061. doi: 10.1158/1078-0432.CCR-20-3251. Epub 2020 Dec 15. Clin Cancer Res. 2021. PMID: 33323402 Free PMC article.

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