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MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics.
Bueschl C, Kluger B, Neumann NKN, Doppler M, Maschietto V, Thallinger GG, Meng-Reiterer J, Krska R, Schuhmacher R. Bueschl C, et al. Among authors: thallinger gg. Anal Chem. 2017 Sep 5;89(17):9518-9526. doi: 10.1021/acs.analchem.7b02518. Epub 2017 Aug 22. Anal Chem. 2017. PMID: 28787149 Free PMC article.
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Schloss PD, et al. Among authors: thallinger gg. Appl Environ Microbiol. 2009 Dec;75(23):7537-41. doi: 10.1128/AEM.01541-09. Epub 2009 Oct 2. Appl Environ Microbiol. 2009. PMID: 19801464 Free PMC article.
Untargeted profiling of tracer-derived metabolites using stable isotopic labeling and fast polarity-switching LC-ESI-HRMS.
Kluger B, Bueschl C, Neumann N, Stückler R, Doppler M, Chassy AW, Waterhouse AL, Rechthaler J, Kampleitner N, Thallinger GG, Adam G, Krska R, Schuhmacher R. Kluger B, et al. Among authors: thallinger gg. Anal Chem. 2014 Dec 2;86(23):11533-7. doi: 10.1021/ac503290j. Epub 2014 Nov 17. Anal Chem. 2014. PMID: 25372979 Free PMC article.
Deciphering lipid structures based on platform-independent decision rules.
Hartler J, Triebl A, Ziegl A, Trötzmüller M, Rechberger GN, Zeleznik OA, Zierler KA, Torta F, Cazenave-Gassiot A, Wenk MR, Fauland A, Wheelock CE, Armando AM, Quehenberger O, Zhang Q, Wakelam MJO, Haemmerle G, Spener F, Köfeler HC, Thallinger GG. Hartler J, et al. Among authors: thallinger gg. Nat Methods. 2017 Dec;14(12):1171-1174. doi: 10.1038/nmeth.4470. Epub 2017 Oct 23. Nat Methods. 2017. PMID: 29058722 Free PMC article.
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions.
Damiani T, Bonciarelli S, Thallinger GG, Koehler N, Krettler CA, Salihoğlu AK, Korf A, Pauling JK, Pluskal T, Ni Z, Goracci L. Damiani T, et al. Among authors: thallinger gg. Anal Chem. 2023 Jan 10;95(1):287-303. doi: 10.1021/acs.analchem.2c04406. Anal Chem. 2023. PMID: 36625108 Free PMC article. Review. No abstract available.
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.
Griss J, Jones AR, Sachsenberg T, Walzer M, Gatto L, Hartler J, Thallinger GG, Salek RM, Steinbeck C, Neuhauser N, Cox J, Neumann S, Fan J, Reisinger F, Xu QW, Del Toro N, Pérez-Riverol Y, Ghali F, Bandeira N, Xenarios I, Kohlbacher O, Vizcaíno JA, Hermjakob H. Griss J, et al. Among authors: thallinger gg. Mol Cell Proteomics. 2014 Oct;13(10):2765-75. doi: 10.1074/mcp.O113.036681. Epub 2014 Jun 30. Mol Cell Proteomics. 2014. PMID: 24980485 Free PMC article.
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