Therneau TM - Search Results

1

Calculating sample size estimates for RNA sequencing data.

Hart SN, Therneau TM, Zhang Y, Poland GA, Kocher JP. Hart SN, et al. Among authors: therneau tm. J Comput Biol. 2013 Dec;20(12):970-8. doi: 10.1089/cmb.2012.0283. Epub 2013 Aug 20. J Comput Biol. 2013. PMID: 23961961 Free PMC article.

2

3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer.

Asmann YW, Klee EW, Thompson EA, Perez EA, Middha S, Oberg AL, Therneau TM, Smith DI, Poland GA, Wieben ED, Kocher JP. Asmann YW, et al. Among authors: therneau tm. BMC Genomics. 2009 Nov 16;10:531. doi: 10.1186/1471-2164-10-531. BMC Genomics. 2009. PMID: 19917133 Free PMC article.

3

Technical and biological variance structure in mRNA-Seq data: life in the real world.

Oberg AL, Bot BM, Grill DE, Poland GA, Therneau TM. Oberg AL, et al. Among authors: therneau tm. BMC Genomics. 2012 Jul 7;13:304. doi: 10.1186/1471-2164-13-304. BMC Genomics. 2012. PMID: 22769017 Free PMC article.

4

SERE: single-parameter quality control and sample comparison for RNA-Seq.

Schulze SK, Kanwar R, Gölzenleuchter M, Therneau TM, Beutler AS. Schulze SK, et al. Among authors: therneau tm. BMC Genomics. 2012 Oct 3;13:524. doi: 10.1186/1471-2164-13-524. BMC Genomics. 2012. PMID: 23033915 Free PMC article.

5

BIMA V3: an aligner customized for mate pair library sequencing.

Drucker TM, Johnson SH, Murphy SJ, Cradic KW, Therneau TM, Vasmatzis G. Drucker TM, et al. Among authors: therneau tm. Bioinformatics. 2014 Jun 1;30(11):1627-9. doi: 10.1093/bioinformatics/btu078. Epub 2014 Feb 12. Bioinformatics. 2014. PMID: 24526710

6

Effects of Age and Estrogen on Skeletal Gene Expression in Humans as Assessed by RNA Sequencing.

Farr JN, Roforth MM, Fujita K, Nicks KM, Cunningham JM, Atkinson EJ, Therneau TM, McCready LK, Peterson JM, Drake MT, Monroe DG, Khosla S. Farr JN, et al. Among authors: therneau tm. PLoS One. 2015 Sep 24;10(9):e0138347. doi: 10.1371/journal.pone.0138347. eCollection 2015. PLoS One. 2015. PMID: 26402159 Free PMC article.

7

Faster cyclic loess: normalizing RNA arrays via linear models.

Ballman KV, Grill DE, Oberg AL, Therneau TM. Ballman KV, et al. Among authors: therneau tm. Bioinformatics. 2004 Nov 1;20(16):2778-86. doi: 10.1093/bioinformatics/bth327. Epub 2004 May 27. Bioinformatics. 2004. PMID: 15166021

8

Joint estimation of calibration and expression for high-density oligonucleotide arrays.

Oberg AL, Mahoney DW, Ballman KV, Therneau TM. Oberg AL, et al. Among authors: therneau tm. Bioinformatics. 2006 Oct 1;22(19):2381-7. doi: 10.1093/bioinformatics/btl399. Epub 2006 Jul 28. Bioinformatics. 2006. PMID: 16877757

9

Statistical metrics for quality assessment of high-density tiling array data.

Tang H, Therneau TM. Tang H, et al. Among authors: therneau tm. Biometrics. 2010 Jun;66(2):630-5. doi: 10.1111/j.1541-0420.2009.01298.x. Epub 2009 Jul 23. Biometrics. 2010. PMID: 19645697 Free PMC article.

10

Quality assessment metrics for whole genome gene expression profiling of paraffin embedded samples.

Mahoney DW, Therneau TM, Anderson SK, Jen J, Kocher JP, Reinholz MM, Perez EA, Eckel-Passow JE. Mahoney DW, et al. Among authors: therneau tm. BMC Res Notes. 2013 Jan 30;6:33. doi: 10.1186/1756-0500-6-33. BMC Res Notes. 2013. PMID: 23360712 Free PMC article.

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