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Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.
Genome Biol. 2021 Apr 16;22(1):109. doi: 10.1186/s13059-021-02315-0.
Genome Biol. 2021.
PMID: 33863344
Free PMC article.
Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology.
Deveson IW, Gong B, Lai K, LoCoco JS, Richmond TA, Schageman J, Zhang Z, Novoradovskaya N, Willey JC, Jones W, Kusko R, Chen G, Madala BS, Blackburn J, Stevanovski I, Bhandari A, Close D, Conroy J, Hubank M, Marella N, Mieczkowski PA, Qiu F, Sebra R, Stetson D, Sun L, Szankasi P, Tan H, Tang LY, Arib H, Best H, Burgher B, Bushel PR, Casey F, Cawley S, Chang CJ, Choi J, Dinis J, Duncan D, Eterovic AK, Feng L, Ghosal A, Giorda K, Glenn S, Happe S, Haseley N, Horvath K, Hung LY, Jarosz M, Kushwaha G, Li D, Li QZ, Li Z, Liu LC, Liu Z, Ma C, Mason CE, Megherbi DB, Morrison T, Pabón-Peña C, Pirooznia M, Proszek PZ, Raymond A, Rindler P, Ringler R, Scherer A, Shaknovich R, Shi T, Smith M, Song P, Strahl M, Thodima VJ, Tom N, Verma S, Wang J, Wu L, Xiao W, Xu C, Yang M, Zhang G, Zhang S, Zhang Y, Shi L, Tong W, Johann DJ Jr, Mercer TR, Xu J; SEQC2 Oncopanel Sequencing Working Group.
Deveson IW, et al. Among authors: thodima vj.
Nat Biotechnol. 2021 Sep;39(9):1115-1128. doi: 10.1038/s41587-021-00857-z. Epub 2021 Apr 12.
Nat Biotechnol. 2021.
PMID: 33846644
Free PMC article.
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Neutrophil chemokines secreted by tumor cells mount a lung antimetastatic response during renal cell carcinoma progression.
López-Lago MA, Posner S, Thodima VJ, Molina AM, Motzer RJ, Chaganti RS.
López-Lago MA, et al. Among authors: thodima vj.
Oncogene. 2013 Apr 4;32(14):1752-60. doi: 10.1038/onc.2012.201. Epub 2012 Jun 4.
Oncogene. 2013.
PMID: 22665059
Free PMC article.
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Genomic deregulation during metastasis of renal cell carcinoma implements a myofibroblast-like program of gene expression.
López-Lago MA, Thodima VJ, Guttapalli A, Chan T, Heguy A, Molina AM, Reuter VE, Motzer RJ, Chaganti RS.
López-Lago MA, et al. Among authors: thodima vj.
Cancer Res. 2010 Dec 1;70(23):9682-92. doi: 10.1158/0008-5472.CAN-10-2279. Epub 2010 Oct 15.
Cancer Res. 2010.
PMID: 20952505
Free PMC article.
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