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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: tomita m. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808
E-Cell 2: multi-platform E-Cell simulation system.
Takahashi K, Ishikawa N, Sadamoto Y, Sasamoto H, Ohta S, Shiozawa A, Miyoshi F, Naito Y, Nakayama Y, Tomita M. Takahashi K, et al. Among authors: tomita m. Bioinformatics. 2003 Sep 1;19(13):1727-9. doi: 10.1093/bioinformatics/btg221. Bioinformatics. 2003. PMID: 15593410
E-CELL: software environment for whole-cell simulation.
Tomita M, Hashimoto K, Takahashi K, Shimizu TS, Matsuzaki Y, Miyoshi F, Saito K, Tanida S, Yugi K, Venter JC, Hutchison CA 3rd. Tomita M, et al. Bioinformatics. 1999 Jan;15(1):72-84. doi: 10.1093/bioinformatics/15.1.72. Bioinformatics. 1999. PMID: 10068694
[Towards large-scale simulation of cellular processes].
Nakayama Y, Tomita M. Nakayama Y, et al. Among authors: tomita m. Tanpakushitsu Kakusan Koso. 2001 Dec;46(16 Suppl):2538-43. Tanpakushitsu Kakusan Koso. 2001. PMID: 11802426 Review. Japanese. No abstract available.
2,488 results