Tsirigos A - Search Results

1

A new computational method for the detection of horizontal gene transfer events.

Tsirigos A, Rigoutsos I. Tsirigos A, et al. Nucleic Acids Res. 2005 Feb 16;33(3):922-33. doi: 10.1093/nar/gki187. Print 2005. Nucleic Acids Res. 2005. PMID: 15716310 Free PMC article.

2

A sensitive, support-vector-machine method for the detection of horizontal gene transfers in viral, archaeal and bacterial genomes.

Tsirigos A, Rigoutsos I. Tsirigos A, et al. Nucleic Acids Res. 2005 Jul 8;33(12):3699-707. doi: 10.1093/nar/gki660. Print 2005. Nucleic Acids Res. 2005. PMID: 16006619 Free PMC article.

3

Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes.

Rigoutsos I, Huynh T, Miranda K, Tsirigos A, McHardy A, Platt D. Rigoutsos I, et al. Among authors: tsirigos a. Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6605-10. doi: 10.1073/pnas.0601688103. Epub 2006 Apr 24. Proc Natl Acad Sci U S A. 2006. PMID: 16636294 Free PMC article.

4

Accurate phylogenetic classification of variable-length DNA fragments.

McHardy AC, Martín HG, Tsirigos A, Hugenholtz P, Rigoutsos I. McHardy AC, et al. Among authors: tsirigos a. Nat Methods. 2007 Jan;4(1):63-72. doi: 10.1038/nmeth976. Epub 2006 Dec 10. Nat Methods. 2007. PMID: 17179938

5

Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs.

Tsirigos A, Rigoutsos I. Tsirigos A, et al. Nucleic Acids Res. 2008 Jun;36(10):3484-93. doi: 10.1093/nar/gkn155. Epub 2008 May 1. Nucleic Acids Res. 2008. PMID: 18450818 Free PMC article.

6

Alu and b1 repeats have been selectively retained in the upstream and intronic regions of genes of specific functional classes.

Tsirigos A, Rigoutsos I. Tsirigos A, et al. PLoS Comput Biol. 2009 Dec;5(12):e1000610. doi: 10.1371/journal.pcbi.1000610. Epub 2009 Dec 18. PLoS Comput Biol. 2009. PMID: 20019790 Free PMC article.

7

Dynamic changes in the human methylome during differentiation.

Laurent L, Wong E, Li G, Huynh T, Tsirigos A, Ong CT, Low HM, Kin Sung KW, Rigoutsos I, Loring J, Wei CL. Laurent L, et al. Among authors: tsirigos a. Genome Res. 2010 Mar;20(3):320-31. doi: 10.1101/gr.101907.109. Epub 2010 Feb 4. Genome Res. 2010. PMID: 20133333 Free PMC article.

8

OMiR: Identification of associations between OMIM diseases and microRNAs.

Rossi S, Tsirigos A, Amoroso A, Mascellani N, Rigoutsos I, Calin GA, Volinia S. Rossi S, et al. Among authors: tsirigos a. Genomics. 2011 Feb;97(2):71-6. doi: 10.1016/j.ygeno.2010.10.004. Epub 2010 Oct 23. Genomics. 2011. PMID: 20974243 Free article.

9

N-BLR, a primate-specific non-coding transcript leads to colorectal cancer invasion and migration.

Rigoutsos I, Lee SK, Nam SY, Anfossi S, Pasculli B, Pichler M, Jing Y, Rodriguez-Aguayo C, Telonis AG, Rossi S, Ivan C, Catela Ivkovic T, Fabris L, Clark PM, Ling H, Shimizu M, Redis RS, Shah MY, Zhang X, Okugawa Y, Jung EJ, Tsirigos A, Huang L, Ferdin J, Gafà R, Spizzo R, Nicoloso MS, Paranjape AN, Shariati M, Tiron A, Yeh JJ, Teruel-Montoya R, Xiao L, Melo SA, Menter D, Jiang ZQ, Flores ER, Negrini M, Goel A, Bar-Eli M, Mani SA, Liu CG, Lopez-Berestein G, Berindan-Neagoe I, Esteller M, Kopetz S, Lanza G, Calin GA. Rigoutsos I, et al. Among authors: tsirigos a. Genome Biol. 2017 May 24;18(1):98. doi: 10.1186/s13059-017-1224-0. Genome Biol. 2017. PMID: 28535802 Free PMC article.

10

GenomicTools: a computational platform for developing high-throughput analytics in genomics.

Tsirigos A, Haiminen N, Bilal E, Utro F. Tsirigos A, et al. Bioinformatics. 2012 Jan 15;28(2):282-3. doi: 10.1093/bioinformatics/btr646. Epub 2011 Nov 22. Bioinformatics. 2012. PMID: 22113082

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