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RNA-Seq: a method for comprehensive transcriptome analysis.
Nagalakshmi U, Waern K, Snyder M. Nagalakshmi U, et al. Among authors: waern k. Curr Protoc Mol Biol. 2010 Jan;Chapter 4:Unit 4.11.1-13. doi: 10.1002/0471142727.mb0411s89. Curr Protoc Mol Biol. 2010. PMID: 20069539
RNA sequencing.
Waern K, Nagalakshmi U, Snyder M. Waern K, et al. Methods Mol Biol. 2011;759:125-32. doi: 10.1007/978-1-61779-173-4_8. Methods Mol Biol. 2011. PMID: 21863485
Genome-wide profiling of human cap-independent translation-enhancing elements.
Wellensiek BP, Larsen AC, Stephens B, Kukurba K, Waern K, Briones N, Liu L, Snyder M, Jacobs BL, Kumar S, Chaput JC. Wellensiek BP, et al. Among authors: waern k. Nat Methods. 2013 Aug;10(8):747-50. doi: 10.1038/nmeth.2522. Epub 2013 Jun 16. Nat Methods. 2013. PMID: 23770754 Free PMC article.
The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.
Lardenois A, Stuparevic I, Liu Y, Law MJ, Becker E, Smagulova F, Waern K, Guilleux MH, Horecka J, Chu A, Kervarrec C, Strich R, Snyder M, Davis RW, Steinmetz LM, Primig M. Lardenois A, et al. Among authors: waern k. Nucleic Acids Res. 2015 Jan;43(1):115-28. doi: 10.1093/nar/gku1185. Epub 2014 Dec 3. Nucleic Acids Res. 2015. PMID: 25477386 Free PMC article.