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Functional characterization of a catabolic plasmid from polychlorinated- biphenyl-degrading Rhodococcus sp. strain RHA1.
Warren R, Hsiao WW, Kudo H, Myhre M, Dosanjh M, Petrescu A, Kobayashi H, Shimizu S, Miyauchi K, Masai E, Yang G, Stott JM, Schein JE, Shin H, Khattra J, Smailus D, Butterfield YS, Siddiqui A, Holt R, Marra MA, Jones SJ, Mohn WW, Brinkman FS, Fukuda M, Davies J, Eltis LD. Warren R, et al. J Bacteriol. 2004 Nov;186(22):7783-95. doi: 10.1128/JB.186.22.7783-7795.2004. J Bacteriol. 2004. PMID: 15516593 Free PMC article.
Physical map-assisted whole-genome shotgun sequence assemblies.
Warren RL, Varabei D, Platt D, Huang X, Messina D, Yang SP, Kronstad JW, Krzywinski M, Warren WC, Wallis JW, Hillier LW, Chinwalla AT, Schein JE, Siddiqui AS, Marra MA, Wilson RK, Jones SJ. Warren RL, et al. Among authors: warren wc. Genome Res. 2006 Jun;16(6):768-75. doi: 10.1101/gr.5090606. Genome Res. 2006. PMID: 16741162 Free PMC article.
Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals.
Bakkeren G, Jiang G, Warren RL, Butterfield Y, Shin H, Chiu R, Linning R, Schein J, Lee N, Hu G, Kupfer DM, Tang Y, Roe BA, Jones S, Marra M, Kronstad JW. Bakkeren G, et al. Among authors: warren rl. Fungal Genet Biol. 2006 Sep;43(9):655-66. doi: 10.1016/j.fgb.2006.04.002. Epub 2006 Jun 21. Fungal Genet Biol. 2006. PMID: 16793293
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.
McLeod MP, Warren RL, Hsiao WW, Araki N, Myhre M, Fernandes C, Miyazawa D, Wong W, Lillquist AL, Wang D, Dosanjh M, Hara H, Petrescu A, Morin RD, Yang G, Stott JM, Schein JE, Shin H, Smailus D, Siddiqui AS, Marra MA, Jones SJ, Holt R, Brinkman FS, Miyauchi K, Fukuda M, Davies JE, Mohn WW, Eltis LD. McLeod MP, et al. Among authors: warren rl. Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15582-7. doi: 10.1073/pnas.0607048103. Epub 2006 Oct 9. Proc Natl Acad Sci U S A. 2006. PMID: 17030794 Free PMC article.
THOR: targeted high-throughput ortholog reconstructor.
Bainbridge MN, Warren RL, He A, Bilenky M, Robertson AG, Jones SJ. Bainbridge MN, et al. Among authors: warren rl. Bioinformatics. 2007 Oct 1;23(19):2622-4. doi: 10.1093/bioinformatics/btl513. Epub 2006 Oct 11. Bioinformatics. 2007. PMID: 17038343
Assembling millions of short DNA sequences using SSAKE.
Warren RL, Sutton GG, Jones SJ, Holt RA. Warren RL, et al. Bioinformatics. 2007 Feb 15;23(4):500-1. doi: 10.1093/bioinformatics/btl629. Epub 2006 Dec 8. Bioinformatics. 2007. PMID: 17158514 Free PMC article.
Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution.
Shah SP, Morin RD, Khattra J, Prentice L, Pugh T, Burleigh A, Delaney A, Gelmon K, Guliany R, Senz J, Steidl C, Holt RA, Jones S, Sun M, Leung G, Moore R, Severson T, Taylor GA, Teschendorff AE, Tse K, Turashvili G, Varhol R, Warren RL, Watson P, Zhao Y, Caldas C, Huntsman D, Hirst M, Marra MA, Aparicio S. Shah SP, et al. Among authors: warren rl. Nature. 2009 Oct 8;461(7265):809-13. doi: 10.1038/nature08489. Nature. 2009. PMID: 19812674
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.
D'Souza CA, Kronstad JW, Taylor G, Warren R, Yuen M, Hu G, Jung WH, Sham A, Kidd SE, Tangen K, Lee N, Zeilmaker T, Sawkins J, McVicker G, Shah S, Gnerre S, Griggs A, Zeng Q, Bartlett K, Li W, Wang X, Heitman J, Stajich JE, Fraser JA, Meyer W, Carter D, Schein J, Krzywinski M, Kwon-Chung KJ, Varma A, Wang J, Brunham R, Fyfe M, Ouellette BF, Siddiqui A, Marra M, Jones S, Holt R, Birren BW, Galagan JE, Cuomo CA. D'Souza CA, et al. mBio. 2011 Feb 8;2(1):e00342-10. doi: 10.1128/mBio.00342-10. Print 2011. mBio. 2011. PMID: 21304167 Free PMC article.
195 results