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The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.
Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ; OBI Consortium; Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S. Smith B, et al. Among authors: whetzel pl. Nat Biotechnol. 2007 Nov;25(11):1251-5. doi: 10.1038/nbt1346. Nat Biotechnol. 2007. PMID: 17989687 Free PMC article.
The Ontology for Biomedical Investigations.
Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ Jr, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J. Bandrowski A, et al. Among authors: whetzel pl. PLoS One. 2016 Apr 29;11(4):e0154556. doi: 10.1371/journal.pone.0154556. eCollection 2016. PLoS One. 2016. PMID: 27128319 Free PMC article.
Wrestling with SUMO and bio-ontologies.
Stoeckert C, Ball C, Brazma A, Brinkman R, Causton H, Fan L, Fostel J, Fragoso G, Heiskanen M, Holstege F, Morrison N, Parkinson H, Quackenbush J, Rocca-Serra P, Sansone SA, Sarkans U, Sherlock G, Stevens R, Taylor C, Taylor R, Whetzel P, White J. Stoeckert C, et al. Nat Biotechnol. 2006 Jan;24(1):21-2; author reply 23. doi: 10.1038/nbt0106-21a. Nat Biotechnol. 2006. PMID: 16404382 No abstract available.
Development of FuGO: an ontology for functional genomics investigations.
Whetzel PL, Brinkman RR, Causton HC, Fan L, Field D, Fostel J, Fragoso G, Gray T, Heiskanen M, Hernandez-Boussard T, Morrison N, Parkinson H, Rocca-Serra P, Sansone SA, Schober D, Smith B, Stevens R, Stoeckert CJ Jr, Taylor C, White J, Wood A; FuGO Working Group. Whetzel PL, et al. OMICS. 2006 Summer;10(2):199-204. doi: 10.1089/omi.2006.10.199. OMICS. 2006. PMID: 16901226 Free PMC article. Review.
OntoMaton: a bioportal powered ontology widget for Google Spreadsheets.
Maguire E, González-Beltrán A, Whetzel PL, Sansone SA, Rocca-Serra P. Maguire E, et al. Among authors: whetzel pl. Bioinformatics. 2013 Feb 15;29(4):525-7. doi: 10.1093/bioinformatics/bts718. Epub 2012 Dec 24. Bioinformatics. 2013. PMID: 23267176 Free PMC article.
The National Center for Biomedical Ontology.
Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B; NCBO team. Musen MA, et al. Among authors: whetzel pl. J Am Med Inform Assoc. 2012 Mar-Apr;19(2):190-5. doi: 10.1136/amiajnl-2011-000523. Epub 2011 Nov 10. J Am Med Inform Assoc. 2012. PMID: 22081220 Free PMC article.
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA, Brazma A, Degreef J, Hardy N, Hermjakob H, Hubbard SJ, Hussey P, Igra M, Jenkins H, Julian RK Jr, Laursen K, Oliver SG, Paton NW, Sansone SA, Sarkans U, Stoeckert CJ Jr, Taylor CF, Whetzel PL, White JA, Spellman P, Pizarro A. Jones AR, et al. Among authors: whetzel pl. Nat Biotechnol. 2007 Oct;25(10):1127-33. doi: 10.1038/nbt1347. Nat Biotechnol. 2007. PMID: 17921998
BioPortal: ontologies and integrated data resources at the click of a mouse.
Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA. Noy NF, et al. Among authors: whetzel pl. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W170-3. doi: 10.1093/nar/gkp440. Epub 2009 May 29. Nucleic Acids Res. 2009. PMID: 19483092 Free PMC article.
31 results