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Distilling structure in Taverna scientific workflows: a refactoring approach.
Cohen-Boulakia S, Chen J, Missier P, Goble C, Williams AR, Froidevaux C. Cohen-Boulakia S, et al. Among authors: williams ar. BMC Bioinformatics. 2014;15 Suppl 1(Suppl 1):S12. doi: 10.1186/1471-2105-15-S1-S12. Epub 2014 Jan 10. BMC Bioinformatics. 2014. PMID: 24564760 Free PMC article.
Community-driven computational biology with Debian Linux.
Möller S, Krabbenhöft HN, Tille A, Paleino D, Williams A, Wolstencroft K, Goble C, Holland R, Belhachemi D, Plessy C. Möller S, et al. BMC Bioinformatics. 2010 Dec 21;11 Suppl 12(Suppl 12):S5. doi: 10.1186/1471-2105-11-S12-S5. BMC Bioinformatics. 2010. PMID: 21210984 Free PMC article.
Opening new gateways to workflows for life scientists.
Karasavvas K, Wolstencroft K, Mina E, Cruickshank D, Williams A, De Roure D, Goble C, Roos M. Karasavvas K, et al. Stud Health Technol Inform. 2012;175:131-41. Stud Health Technol Inform. 2012. PMID: 22942004
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C. Wolstencroft K, et al. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W557-61. doi: 10.1093/nar/gkt328. Epub 2013 May 2. Nucleic Acids Res. 2013. PMID: 23640334 Free PMC article.
BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.
Hardisty AR, Bacall F, Beard N, Balcázar-Vargas MP, Balech B, Barcza Z, Bourlat SJ, De Giovanni R, de Jong Y, De Leo F, Dobor L, Donvito G, Fellows D, Guerra AF, Ferreira N, Fetyukova Y, Fosso B, Giddy J, Goble C, Güntsch A, Haines R, Ernst VH, Hettling H, Hidy D, Horváth F, Ittzés D, Ittzés P, Jones A, Kottmann R, Kulawik R, Leidenberger S, Lyytikäinen-Saarenmaa P, Mathew C, Morrison N, Nenadic A, de la Hidalga AN, Obst M, Oostermeijer G, Paymal E, Pesole G, Pinto S, Poigné A, Fernandez FQ, Santamaria M, Saarenmaa H, Sipos G, Sylla KH, Tähtinen M, Vicario S, Vos RA, Williams AR, Yilmaz P. Hardisty AR, et al. Among authors: williams ar. BMC Ecol. 2016 Oct 20;16(1):49. doi: 10.1186/s12898-016-0103-y. BMC Ecol. 2016. PMID: 27765035 Free PMC article.
Ten simple rules for making a software tool workflow-ready.
Brack P, Crowther P, Soiland-Reyes S, Owen S, Lowe D, Williams AR, Groom Q, Dillen M, Coppens F, Grüning B, Eguinoa I, Ewels P, Goble C. Brack P, et al. Among authors: williams ar. PLoS Comput Biol. 2022 Mar 24;18(3):e1009823. doi: 10.1371/journal.pcbi.1009823. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35324885 Free PMC article. No abstract available.
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
McMurry JA, Juty N, Blomberg N, Burdett T, Conlin T, Conte N, Courtot M, Deck J, Dumontier M, Fellows DK, Gonzalez-Beltran A, Gormanns P, Grethe J, Hastings J, Hériché JK, Hermjakob H, Ison JC, Jimenez RC, Jupp S, Kunze J, Laibe C, Le Novère N, Malone J, Martin MJ, McEntyre JR, Morris C, Muilu J, Müller W, Rocca-Serra P, Sansone SA, Sariyar M, Snoep JL, Soiland-Reyes S, Stanford NJ, Swainston N, Washington N, Williams AR, Wimalaratne SM, Winfree LM, Wolstencroft K, Goble C, Mungall CJ, Haendel MA, Parkinson H. McMurry JA, et al. Among authors: williams ar. PLoS Biol. 2017 Jun 29;15(6):e2001414. doi: 10.1371/journal.pbio.2001414. eCollection 2017 Jun. PLoS Biol. 2017. PMID: 28662064 Free PMC article.
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.
Wolstencroft K, Krebs O, Snoep JL, Stanford NJ, Bacall F, Golebiewski M, Kuzyakiv R, Nguyen Q, Owen S, Soiland-Reyes S, Straszewski J, van Niekerk DD, Williams AR, Malmström L, Rinn B, Müller W, Goble C. Wolstencroft K, et al. Among authors: williams ar. Nucleic Acids Res. 2017 Jan 4;45(D1):D404-D407. doi: 10.1093/nar/gkw1032. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899646 Free PMC article.
SYNBIOCHEM-a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals.
Carbonell P, Currin A, Dunstan M, Fellows D, Jervis A, Rattray NJ, Robinson CJ, Swainston N, Vinaixa M, Williams A, Yan C, Barran P, Breitling R, Chen GG, Faulon JL, Goble C, Goodacre R, Kell DB, Feuvre RL, Micklefield J, Scrutton NS, Shapira P, Takano E, Turner NJ. Carbonell P, et al. Biochem Soc Trans. 2016 Jun 15;44(3):675-7. doi: 10.1042/BST20160009. Biochem Soc Trans. 2016. PMID: 27284023 Free PMC article.
653 results