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Identifying lineage effects when controlling for population structure improves power in bacterial association studies.
Earle SG, Wu CH, Charlesworth J, Stoesser N, Gordon NC, Walker TM, Spencer CCA, Iqbal Z, Clifton DA, Hopkins KL, Woodford N, Smith EG, Ismail N, Llewelyn MJ, Peto TE, Crook DW, McVean G, Walker AS, Wilson DJ. Earle SG, et al. Among authors: wu ch. Nat Microbiol. 2016 Apr 4;1:16041. doi: 10.1038/nmicrobiol.2016.41. Nat Microbiol. 2016. PMID: 27572646 Free PMC article.
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. Bouckaert R, et al. Among authors: wu ch. PLoS Comput Biol. 2019 Apr 8;15(4):e1006650. doi: 10.1371/journal.pcbi.1006650. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30958812 Free PMC article.
Severe infections emerge from commensal bacteria by adaptive evolution.
Young BC, Wu CH, Gordon NC, Cole K, Price JR, Liu E, Sheppard AE, Perera S, Charlesworth J, Golubchik T, Iqbal Z, Bowden R, Massey RC, Paul J, Crook DW, Peto TE, Walker AS, Llewelyn MJ, Wyllie DH, Wilson DJ. Young BC, et al. Among authors: wu ch. Elife. 2017 Dec 19;6:e30637. doi: 10.7554/eLife.30637. Elife. 2017. PMID: 29256859 Free PMC article.
Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study.
Young BC, Wu CH, Charlesworth J, Earle S, Price JR, Gordon NC, Cole K, Dunn L, Liu E, Oakley S, Godwin H, Fung R, Miller R, Knox K, Votintseva A, Quan TP, Tilley R, Scarborough M, Crook DW, Peto TE, Walker AS, Llewelyn MJ, Wilson DJ. Young BC, et al. Among authors: wu ch. Microb Genom. 2021 Nov;7(11):000700. doi: 10.1099/mgen.0.000700. Microb Genom. 2021. PMID: 34812717 Free PMC article.
BEAST 2: a software platform for Bayesian evolutionary analysis.
Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ. Bouckaert R, et al. Among authors: wu ch. PLoS Comput Biol. 2014 Apr 10;10(4):e1003537. doi: 10.1371/journal.pcbi.1003537. eCollection 2014 Apr. PLoS Comput Biol. 2014. PMID: 24722319 Free PMC article.
Evolutionary dynamics of language systems.
Greenhill SJ, Wu CH, Hua X, Dunn M, Levinson SC, Gray RD. Greenhill SJ, et al. Among authors: wu ch. Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8822-E8829. doi: 10.1073/pnas.1700388114. Epub 2017 Oct 4. Proc Natl Acad Sci U S A. 2017. PMID: 29073028 Free PMC article.
3,834 results