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BEAST 2: a software platform for Bayesian evolutionary analysis.
Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ. Bouckaert R, et al. Among authors: xie d. PLoS Comput Biol. 2014 Apr 10;10(4):e1003537. doi: 10.1371/journal.pcbi.1003537. eCollection 2014 Apr. PLoS Comput Biol. 2014. PMID: 24722319 Free PMC article.
Estimating the basic reproductive number from viral sequence data.
Stadler T, Kouyos R, von Wyl V, Yerly S, Böni J, Bürgisser P, Klimkait T, Joos B, Rieder P, Xie D, Günthard HF, Drummond AJ, Bonhoeffer S; Swiss HIV Cohort Study. Stadler T, et al. Among authors: xie d. Mol Biol Evol. 2012 Jan;29(1):347-57. doi: 10.1093/molbev/msr217. Epub 2011 Sep 2. Mol Biol Evol. 2012. PMID: 21890480
Bayesian phylogenetics with BEAUti and the BEAST 1.7.
Drummond AJ, Suchard MA, Xie D, Rambaut A. Drummond AJ, et al. Among authors: xie d. Mol Biol Evol. 2012 Aug;29(8):1969-73. doi: 10.1093/molbev/mss075. Epub 2012 Feb 25. Mol Biol Evol. 2012. PMID: 22367748 Free PMC article.
Evaluating a multigene environmental DNA approach for biodiversity assessment.
Drummond AJ, Newcomb RD, Buckley TR, Xie D, Dopheide A, Potter BC, Heled J, Ross HA, Tooman L, Grosser S, Park D, Demetras NJ, Stevens MI, Russell JC, Anderson SH, Carter A, Nelson N. Drummond AJ, et al. Among authors: xie d. Gigascience. 2015 Oct 6;4:46. doi: 10.1186/s13742-015-0086-1. eCollection 2015. Gigascience. 2015. PMID: 26445670 Free PMC article.
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. Bouckaert R, et al. Among authors: xie d. PLoS Comput Biol. 2019 Apr 8;15(4):e1006650. doi: 10.1371/journal.pcbi.1006650. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30958812 Free PMC article.
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations.
Douglas J, Mendes FK, Bouckaert R, Xie D, Jiménez-Silva CL, Swanepoel C, de Ligt J, Ren X, Storey M, Hadfield J, Simpson CR, Geoghegan JL, Drummond AJ, Welch D. Douglas J, et al. Among authors: xie d. Virus Evol. 2021 Jun 8;7(2):veab052. doi: 10.1093/ve/veab052. eCollection 2021. Virus Evol. 2021. PMID: 34527282 Free PMC article.
5,104 results