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Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4.
Rohde H, Qin J, Cui Y, Li D, Loman NJ, Hentschke M, Chen W, Pu F, Peng Y, Li J, Xi F, Li S, Li Y, Zhang Z, Yang X, Zhao M, Wang P, Guan Y, Cen Z, Zhao X, Christner M, Kobbe R, Loos S, Oh J, Yang L, Danchin A, Gao GF, Song Y, Li Y, Yang H, Wang J, Xu J, Pallen MJ, Wang J, Aepfelbacher M, Yang R; E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium. Rohde H, et al. Among authors: yang r, yang l, yang x, yang h. N Engl J Med. 2011 Aug 25;365(8):718-24. doi: 10.1056/NEJMoa1107643. Epub 2011 Jul 27. N Engl J Med. 2011. PMID: 21793736 Free article.
Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans.
Song Y, Tong Z, Wang J, Wang L, Guo Z, Han Y, Zhang J, Pei D, Zhou D, Qin H, Pang X, Han Y, Zhai J, Li M, Cui B, Qi Z, Jin L, Dai R, Chen F, Li S, Ye C, Du Z, Lin W, Wang J, Yu J, Yang H, Wang J, Huang P, Yang R. Song Y, et al. Among authors: yang r, yang h. DNA Res. 2004 Jun 30;11(3):179-97. doi: 10.1093/dnares/11.3.179. DNA Res. 2004. PMID: 15368893 Free article.
Pseudogene accumulation might promote the adaptive microevolution of Yersinia pestis.
Tong Z, Zhou D, Song Y, Zhang L, Pei D, Han Y, Pang X, Li M, Cui B, Wang J, Guo Z, Qi Z, Jin L, Zhai J, Du Z, Wang J, Wang X, Yu J, Wang J, Huang P, Yang H, Yang R. Tong Z, et al. Among authors: yang r, yang h. J Med Microbiol. 2005 Mar;54(Pt 3):259-268. doi: 10.1099/jmm.0.45752-0. J Med Microbiol. 2005. PMID: 15713609
A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates.
Chen C, Tang J, Dong W, Wang C, Feng Y, Wang J, Zheng F, Pan X, Liu D, Li M, Song Y, Zhu X, Sun H, Feng T, Guo Z, Ju A, Ge J, Dong Y, Sun W, Jiang Y, Wang J, Yan J, Yang H, Wang X, Gao GF, Yang R, Wang J, Yu J. Chen C, et al. Among authors: yang r, yang h. PLoS One. 2007 Mar 21;2(3):e315. doi: 10.1371/journal.pone.0000315. PLoS One. 2007. PMID: 17375201 Free PMC article.
Building the sequence map of the human pan-genome.
Li R, Li Y, Zheng H, Luo R, Zhu H, Li Q, Qian W, Ren Y, Tian G, Li J, Zhou G, Zhu X, Wu H, Qin J, Jin X, Li D, Cao H, Hu X, Blanche H, Cann H, Zhang X, Li S, Bolund L, Kristiansen K, Yang H, Wang J, Wang J. Li R, et al. Among authors: yang h. Nat Biotechnol. 2010 Jan;28(1):57-63. doi: 10.1038/nbt.1596. Epub 2009 Dec 7. Nat Biotechnol. 2010. PMID: 19997067
A metagenome-wide association study of gut microbiota in type 2 diabetes.
Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, Liang S, Zhang W, Guan Y, Shen D, Peng Y, Zhang D, Jie Z, Wu W, Qin Y, Xue W, Li J, Han L, Lu D, Wu P, Dai Y, Sun X, Li Z, Tang A, Zhong S, Li X, Chen W, Xu R, Wang M, Feng Q, Gong M, Yu J, Zhang Y, Zhang M, Hansen T, Sanchez G, Raes J, Falony G, Okuda S, Almeida M, LeChatelier E, Renault P, Pons N, Batto JM, Zhang Z, Chen H, Yang R, Zheng W, Li S, Yang H, Wang J, Ehrlich SD, Nielsen R, Pedersen O, Kristiansen K, Wang J. Qin J, et al. Among authors: yang r, yang h. Nature. 2012 Oct 4;490(7418):55-60. doi: 10.1038/nature11450. Epub 2012 Sep 26. Nature. 2012. PMID: 23023125
"Three kingdoms" to romance.
Yu J, Wang J, He F, Yang H. Yu J, et al. Among authors: yang h. Genomics Proteomics Bioinformatics. 2003 Feb;1(1):1. doi: 10.1016/s1672-0229(03)01001-5. Genomics Proteomics Bioinformatics. 2003. PMID: 15626327 Free PMC article. No abstract available.
A genome sequence of novel SARS-CoV isolates: the genotype, GD-Ins29, leads to a hypothesis of viral transmission in South China.
Qin E, He X, Tian W, Liu Y, Li W, Wen J, Wang J, Fan B, Wu Q, Chang G, Cao W, Xu Z, Yang R, Wang J, Yu M, Li Y, Xu J, Si B, Hu Y, Peng W, Tang L, Jiang T, Shi J, Ji J, Zhang Y, Ye J, Wang C, Han Y, Zhou J, Deng Y, Li X, Hu J, Wang C, Yan C, Zhang Q, Bao J, Li G, Chen W, Fang L, Li C, Lei M, Li D, Tong W, Tian X, Wang J, Zhang B, Zhang H, Zhang Y, Zhao H, Zhang X, Li S, Cheng X, Zhang X, Liu B, Zeng C, Li S, Tan X, Liu S, Dong W, Wang J, Wong GK, Yu J, Wang J, Zhu Q, Yang H. Qin E, et al. Among authors: yang r, yang h. Genomics Proteomics Bioinformatics. 2003 May;1(2):101-7. doi: 10.1016/s1672-0229(03)01014-3. Genomics Proteomics Bioinformatics. 2003. PMID: 15626340 Free PMC article.
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