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Page 1
Proto-genes and de novo gene birth.
Carvunis AR, Rolland T, Wapinski I, Calderwood MA, Yildirim MA, Simonis N, Charloteaux B, Hidalgo CA, Barbette J, Santhanam B, Brar GA, Weissman JS, Regev A, Thierry-Mieg N, Cusick ME, Vidal M. Carvunis AR, et al. Among authors: yildirim ma. Nature. 2012 Jul 19;487(7407):370-4. doi: 10.1038/nature11184. Nature. 2012. PMID: 22722833 Free PMC article.
Drug-target network.
Yildirim MA, Goh KI, Cusick ME, Barabási AL, Vidal M. Yildirim MA, et al. Nat Biotechnol. 2007 Oct;25(10):1119-26. doi: 10.1038/nbt1338. Nat Biotechnol. 2007. PMID: 17921997
Systems engineering to systems biology.
Yildirim MA, Vidal M. Yildirim MA, et al. Mol Syst Biol. 2008;4:185. doi: 10.1038/msb.2008.22. Epub 2008 Apr 15. Mol Syst Biol. 2008. PMID: 18414486 Free PMC article. No abstract available.
An empirical framework for binary interactome mapping.
Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S, Simon C, de Smet AS, Dann E, Smolyar A, Vinayagam A, Yu H, Szeto D, Borick H, Dricot A, Klitgord N, Murray RR, Lin C, Lalowski M, Timm J, Rau K, Boone C, Braun P, Cusick ME, Roth FP, Hill DE, Tavernier J, Wanker EE, Barabási AL, Vidal M. Venkatesan K, et al. Among authors: yildirim ma. Nat Methods. 2009 Jan;6(1):83-90. doi: 10.1038/nmeth.1280. Epub 2008 Dec 7. Nat Methods. 2009. PMID: 19060904 Free PMC article.
Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.
Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, Ayivi-Guedehoussou N, Dann E, Bertin N, Szeto D, Dricot A, Yildirim MA, Lin C, de Smet AS, Kao HL, Simon C, Smolyar A, Ahn JS, Tewari M, Boxem M, Milstein S, Yu H, Dreze M, Vandenhaute J, Gunsalus KC, Cusick ME, Hill DE, Tavernier J, Roth FP, Vidal M. Simonis N, et al. Among authors: yildirim ma. Nat Methods. 2009 Jan;6(1):47-54. doi: 10.1038/nmeth.1279. Nat Methods. 2009. PMID: 19123269 Free PMC article.
'Edgetic' perturbation of a C. elegans BCL2 ortholog.
Dreze M, Charloteaux B, Milstein S, Vidalain PO, Yildirim MA, Zhong Q, Svrzikapa N, Romero V, Laloux G, Brasseur R, Vandenhaute J, Boxem M, Cusick ME, Hill DE, Vidal M. Dreze M, et al. Among authors: yildirim ma. Nat Methods. 2009 Nov;6(11):843-9. doi: 10.1038/nmeth.1394. Epub 2009 Oct 25. Nat Methods. 2009. PMID: 19855391 Free PMC article.
A genome-wide gene function prediction resource for Drosophila melanogaster.
Yan H, Venkatesan K, Beaver JE, Klitgord N, Yildirim MA, Hao T, Hill DE, Cusick ME, Perrimon N, Roth FP, Vidal M. Yan H, et al. Among authors: yildirim ma. PLoS One. 2010 Aug 12;5(8):e12139. doi: 10.1371/journal.pone.0012139. PLoS One. 2010. PMID: 20711346 Free PMC article.
Edgetic perturbation models of human inherited disorders.
Zhong Q, Simonis N, Li QR, Charloteaux B, Heuze F, Klitgord N, Tam S, Yu H, Venkatesan K, Mou D, Swearingen V, Yildirim MA, Yan H, Dricot A, Szeto D, Lin C, Hao T, Fan C, Milstein S, Dupuy D, Brasseur R, Hill DE, Cusick ME, Vidal M. Zhong Q, et al. Among authors: yildirim ma. Mol Syst Biol. 2009;5:321. doi: 10.1038/msb.2009.80. Epub 2009 Nov 3. Mol Syst Biol. 2009. PMID: 19888216 Free PMC article.
High-quality binary protein interaction map of the yeast interactome network.
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabási AL, Tavernier J, Hill DE, Vidal M. Yu H, et al. Among authors: yildirim ma. Science. 2008 Oct 3;322(5898):104-10. doi: 10.1126/science.1158684. Epub 2008 Aug 21. Science. 2008. PMID: 18719252 Free PMC article.
A protein domain-based interactome network for C. elegans early embryogenesis.
Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, Wang H, Schlaitz AL, Hao T, Milstein S, Fan C, Tipsword M, Drew K, Galli M, Rhrissorrakrai K, Drechsel D, Koller D, Roth FP, Iakoucheva LM, Dunker AK, Bonneau R, Gunsalus KC, Hill DE, Piano F, Tavernier J, van den Heuvel S, Hyman AA, Vidal M. Boxem M, et al. Among authors: yildirim ma. Cell. 2008 Aug 8;134(3):534-45. doi: 10.1016/j.cell.2008.07.009. Cell. 2008. PMID: 18692475 Free PMC article.
57 results