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Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes.
Klionsky DJ, Abeliovich H, Agostinis P, Agrawal DK, Aliev G, Askew DS, Baba M, Baehrecke EH, Bahr BA, Ballabio A, Bamber BA, Bassham DC, Bergamini E, Bi X, Biard-Piechaczyk M, Blum JS, Bredesen DE, Brodsky JL, Brumell JH, Brunk UT, Bursch W, Camougrand N, Cebollero E, Cecconi F, Chen Y, Chin LS, Choi A, Chu CT, Chung J, Clarke PG, Clark RS, Clarke SG, Clavé C, Cleveland JL, Codogno P, Colombo MI, Coto-Montes A, Cregg JM, Cuervo AM, Debnath J, Demarchi F, Dennis PB, Dennis PA, Deretic V, Devenish RJ, Di Sano F, Dice JF, Difiglia M, Dinesh-Kumar S, Distelhorst CW, Djavaheri-Mergny M, Dorsey FC, Dröge W, Dron M, Dunn WA Jr, Duszenko M, Eissa NT, Elazar Z, Esclatine A, Eskelinen EL, Fésüs L, Finley KD, Fuentes JM, Fueyo J, Fujisaki K, Galliot B, Gao FB, Gewirtz DA, Gibson SB, Gohla A, Goldberg AL, Gonzalez R, González-Estévez C, Gorski S, Gottlieb RA, Häussinger D, He YW, Heidenreich K, Hill JA, Høyer-Hansen M, Hu X, Huang WP, Iwasaki A, Jäättelä M, Jackson WT, Jiang X, Jin S, Johansen T, Jung JU, Kadowaki M, Kang C, Kelekar A, Kessel DH, Kiel JA, Kim HP, Kimchi A, Kinsella TJ, Kiselyov K, Kitamoto K, Knecht E, Komatsu M, Kominami E, Kondo S, Kovács AL, Kroemer G, Kuan CY, Kumar R, Ku… See abstract for full author list ➔ Klionsky DJ, et al. Among authors: yu l. Autophagy. 2008 Feb;4(2):151-75. doi: 10.4161/auto.5338. Epub 2007 Nov 21. Autophagy. 2008. PMID: 18188003 Free PMC article. Review.
Autophagic cell death.
Lenardo MJ, McPhee CK, Yu L. Lenardo MJ, et al. Among authors: yu l. Methods Enzymol. 2009;453:17-31. doi: 10.1016/S0076-6879(08)04002-0. Methods Enzymol. 2009. PMID: 19216900 Free PMC article.
Immunology. The paracaspase connection.
Yu L, Lenardo MJ. Yu L, et al. Science. 2003 Nov 28;302(5650):1515-6. doi: 10.1126/science.1092951. Science. 2003. PMID: 14645834 No abstract available.
How does acetylation regulate autophagy?
Yi C, Yu L. Yi C, et al. Among authors: yu l. Autophagy. 2012 Oct;8(10):1529-30. doi: 10.4161/auto.21156. Epub 2012 Jun 26. Autophagy. 2012. PMID: 22732483
Termination of autophagy and reformation of lysosomes regulated by mTOR.
Yu L, McPhee CK, Zheng L, Mardones GA, Rong Y, Peng J, Mi N, Zhao Y, Liu Z, Wan F, Hailey DW, Oorschot V, Klumperman J, Baehrecke EH, Lenardo MJ. Yu L, et al. Nature. 2010 Jun 17;465(7300):942-6. doi: 10.1038/nature09076. Epub 2010 Jun 6. Nature. 2010. PMID: 20526321 Free PMC article.
SIP/CacyBP promotes autophagy by regulating levels of BRUCE/Apollon, which stimulates LC3-I degradation.
Jiang TX, Zou JB, Zhu QQ, Liu CH, Wang GF, Du TT, Luo ZY, Guo F, Zhou LM, Liu JJ, Zhang W, Shu YS, Yu L, Li P, Ronai ZA, Matsuzawa SI, Goldberg AL, Qiu XB. Jiang TX, et al. Among authors: yu l. Proc Natl Acad Sci U S A. 2019 Jul 2;116(27):13404-13413. doi: 10.1073/pnas.1901039116. Epub 2019 Jun 18. Proc Natl Acad Sci U S A. 2019. PMID: 31213539 Free PMC article.
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